Figure 5
(A) The interface between the Rcat (pink ribbon) and RING0 (wheat surface) domains for parkin are shown highlighting important residues near the catalytic site. The three residues (Cys431, His433 and Glu444) important for ubiquitin transfer are shown in addition to several residues found at the Rcat (Trp462 and Phe463), RING0 (Lys162, Trp183, Pro180 and Val186) interface (PDB code 4I1F [35]). (B) A portion of the interface between the N-lobe (grey surface) and the catalytic region of the C-lobe (green ribbon) in NEDD4 is shown (PDB code 4BBN [122]). The catalytic cysteine (Cys867) resides between two β-strands similar to the position in parkin and HHARI. Two other residues important for catalysis (His865 and Asp900) are arranged in a mirror fashion compared to the Rcat domain in parkin and HHARI although Asp900 is not visible in the X-ray structure. In both structures the two β-strands were superimposed to achieve similar protein orientations.
Similarity of catalytic sites for parkin and NEDD4

(A) The interface between the Rcat (pink ribbon) and RING0 (wheat surface) domains for parkin are shown highlighting important residues near the catalytic site. The three residues (Cys431, His433 and Glu444) important for ubiquitin transfer are shown in addition to several residues found at the Rcat (Trp462 and Phe463), RING0 (Lys162, Trp183, Pro180 and Val186) interface (PDB code 4I1F [35]). (B) A portion of the interface between the N-lobe (grey surface) and the catalytic region of the C-lobe (green ribbon) in NEDD4 is shown (PDB code 4BBN [122]). The catalytic cysteine (Cys867) resides between two β-strands similar to the position in parkin and HHARI. Two other residues important for catalysis (His865 and Asp900) are arranged in a mirror fashion compared to the Rcat domain in parkin and HHARI although Asp900 is not visible in the X-ray structure. In both structures the two β-strands were superimposed to achieve similar protein orientations.

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