Signaling pathways from environmental cues including nutrient starvation and abiotic and biotic stress may converge on the ATG1 complex to modulate autophagy in plants. Nutrient starvation signaling may proceed through the TOR kinase. Phytohormones also modulate plant autophagy. Possible negative regulations are illustrated with a “T” line, and positive regulations by an arrow. Speculative routes are shown in broken lines. The bottom part illustrates the various selective autophagy routes and the substrate already described in plants. Where a selective cargo receptor is known it has been indicated, while question marks reflect the unknowns, either the nature of the cargo or that of the receptor involved.