Figure 1
Green coloration indicates ideal performance, pale pink coloration indicates tolerable performance, and deep pink coloration indicates unacceptable performance, where non-degenerate methods (a) include ‘small-intelligent libraries’ [8], Slonomics™ [10,11] and ProxiMAX. (A) Diversity was calculated using the formula d=1/(NΣkpk2) [12] and is in agreement for a 12-mer peptide saturated with codon NNN [13]. (B) Ratios represent the theoretical relative concentrations of each individual gene combining any of the most common codons (leucine/arginine/serine, NNN/NNK; or leucine/valine, 22c trick) compared with each individual gene containing any combination of the rarest codons (b) [methionine/tryptophan, NNN; cysteine/aspartate/glutamate/phenylalanine/histidine/isoleucine/lysine/methionine/asparagine/glutamine/tryptophan/tyrosine, NNK; or 18 codons (omitting leucine/valine), 22c trick]. (C) Truncation is calculated as the percentage of sequences that contain one or more termination codons within the saturated region. (D) NNN/NNK/trinucleotide oligonucleotides may be used as a DNA cassette, or as primers in PCR-based mutagenesis; Slonomics™ and ProxiMAX require a fixed number of oligonucleotides and the numbers of primers for the 22c trick [9] and small-intelligent libraries [8] were calculated using the formulae in the respective publications for saturating consecutive codons. (E) cAs dictated by degeneracy limitations.
Comparison of performance of common saturation mutagenesis techniques

Green coloration indicates ideal performance, pale pink coloration indicates tolerable performance, and deep pink coloration indicates unacceptable performance, where non-degenerate methods (a) include ‘small-intelligent libraries’ [8], Slonomics™ [10,11] and ProxiMAX. (A) Diversity was calculated using the formula d=1/(NΣkpk2) [12] and is in agreement for a 12-mer peptide saturated with codon NNN [13]. (B) Ratios represent the theoretical relative concentrations of each individual gene combining any of the most common codons (leucine/arginine/serine, NNN/NNK; or leucine/valine, 22c trick) compared with each individual gene containing any combination of the rarest codons (b) [methionine/tryptophan, NNN; cysteine/aspartate/glutamate/phenylalanine/histidine/isoleucine/lysine/methionine/asparagine/glutamine/tryptophan/tyrosine, NNK; or 18 codons (omitting leucine/valine), 22c trick]. (C) Truncation is calculated as the percentage of sequences that contain one or more termination codons within the saturated region. (D) NNN/NNK/trinucleotide oligonucleotides may be used as a DNA cassette, or as primers in PCR-based mutagenesis; Slonomics™ and ProxiMAX require a fixed number of oligonucleotides and the numbers of primers for the 22c trick [9] and small-intelligent libraries [8] were calculated using the formulae in the respective publications for saturating consecutive codons. (E) cAs dictated by degeneracy limitations.

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