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Articles

The use of immunoaffinity purification approaches coupled with LC-MS/MS offers a powerful strategy to identify protein complexes in filamentous fungi

Ingo Bauer, Özlem Sarikaya Bayram, Özgür Bayram
Journal: Essays in Biochemistry
Essays Biochem (2023) 67 (5): 877–892.
https://doi.org/10.1042/EBC20220253
Published: 13 September 2023
View article titled, The use of immunoaffinity purification approaches coupled with LC-MS/MS offers a powerful strategy to identify protein complexes in filamentous fungi
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Articles

Glycosyltransferase family 47 (GT47) proteins in plants and animals

Liang Zhang, Pradeep Kumar Prabhakar, Vivek S. Bharadwaj, Yannick J. Bomble, Maria J. Peña, Breeanna R. Urbanowicz
Journal: Essays in Biochemistry
Essays Biochem (2023) 67 (3): 639–652.
https://doi.org/10.1042/EBC20220152
Published: 14 April 2023
View article titled, Glycosyltransferase family 47 (GT47) proteins in plants and animals
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Includes: Supplementary data
Articles

A special issue of Essays in Biochemistry on structural mass spectrometry

Hannah M. Britt, Rebecca Beveridge, Antonio N. Calabrese
Journal: Essays in Biochemistry
Essays Biochem (2023) 67 (2): 147–149.
https://doi.org/10.1042/EBC20230006
Published: 29 March 2023
View article titled, A special issue of Essays in Biochemistry on structural mass spectrometry
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Articles

The increasing role of structural proteomics in cyanobacteria

Jaspreet K. Sound, Jeddidiah Bellamy-Carter, Aneika C. Leney
Journal: Essays in Biochemistry
Essays Biochem (2023) 67 (2): 269–282.
https://doi.org/10.1042/EBC20220095
Published: 29 March 2023
View article titled, The increasing role of structural proteomics in cyanobacteria
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Articles

Mass spectrometric insights into protein aggregation

Tara L. Pukala
Journal: Essays in Biochemistry
Essays Biochem (2023) 67 (2): 243–253.
https://doi.org/10.1042/EBC20220103
Published: 29 March 2023
View article titled, Mass spectrometric insights into protein aggregation
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Articles

Surface-sampling mass spectrometry to study proteins and protein complexes

Kei F. Carver Wong, Rebecca E. Greatorex, Charlotte E. Gidman, Sidrah Rahman, Rian L. Griffiths
Journal: Essays in Biochemistry
Essays Biochem (2023) 67 (2): 229–241.
https://doi.org/10.1042/EBC20220191
Published: 29 March 2023
View article titled, Surface-sampling mass spectrometry to study proteins and protein complexes
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Articles

Mass spectrometry of intact membrane proteins: shifting towards a more native-like context

Abraham Oluwole, Denis Shutin, Jani R. Bolla
Journal: Essays in Biochemistry
Essays Biochem (2023) 67 (2): 201–213.
https://doi.org/10.1042/EBC20220169
Published: 29 March 2023
View article titled, Mass spectrometry of intact membrane proteins: shifting towards a more native-like context
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Articles

Protein–RNA interactions: from mass spectrometry to drug discovery

Benjamin Steinmetz, Izabela Smok, Maria Bikaki, Alexander Leitner
Journal: Essays in Biochemistry
Essays Biochem (2023) 67 (2): 175–186.
https://doi.org/10.1042/EBC20220177
Published: 29 March 2023
View article titled, Protein–RNA interactions: from mass spectrometry to drug discovery
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Articles

Cross-linking mass spectrometry for mapping protein complex topologies in situ

Kitaik Lee, Francis J. O'Reilly
Journal: Essays in Biochemistry
Essays Biochem (2023) 67 (2): 215–228.
https://doi.org/10.1042/EBC20220168
Published: 29 March 2023
View article titled, Cross-linking mass spectrometry for mapping protein complex topologies in situ
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Articles

Fundamentals of HDX-MS

Vanesa Vinciauskaite, Glenn R. Masson
Journal: Essays in Biochemistry
Essays Biochem (2023) 67 (2): 301–314.
https://doi.org/10.1042/EBC20220111
Published: 29 March 2023
View article titled, Fundamentals of HDX-MS
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Articles

Crossroads between copper ions and amyloid formation in Parkinson’s disease

Pernilla Wittung-Stafshede
Journal: Essays in Biochemistry
Essays Biochem (2022) 66 (7): 977–986.
https://doi.org/10.1042/EBC20220043
Published: 16 December 2022
View article titled, Crossroads between copper ions and amyloid formation in Parkinson’s disease
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Articles

Controlling amyloid formation of intrinsically disordered proteins and peptides: slowing down or speeding up?

Yong Xu, Roberto Maya-Martinez, Sheena E. Radford
Journal: Essays in Biochemistry
Essays Biochem (2022) 66 (7): 959–975.
https://doi.org/10.1042/EBC20220046
Published: 16 December 2022
View article titled, Controlling amyloid formation of intrinsically disordered proteins and peptides: slowing down or speeding up?
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Articles

Functional benefit of structural disorder for the replication of measles, Nipah and Hendra viruses

Frank Gondelaud, Giulia Pesce, Juliet F. Nilsson, Christophe Bignon, Denis Ptchelkine, Denis Gerlier, Cyrille Mathieu, Sonia Longhi
Journal: Essays in Biochemistry
Essays Biochem (2022) 66 (7): 915–934.
https://doi.org/10.1042/EBC20220045
Published: 16 December 2022
View article titled, Functional benefit of structural disorder for the replication of measles, Nipah and Hendra viruses
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Includes: Supplementary data
Articles

Functional amyloid in a lipid-like environment: a merry dance of many steps

Daniel E. Otzen
Journal: Essays in Biochemistry
Essays Biochem (2022) 66 (7): 1035–1046.
https://doi.org/10.1042/EBC20220062
Published: 16 December 2022
View article titled, Functional amyloid in a lipid-like environment: a merry dance of many steps
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Articles

Phase separation of the microtubule-associated protein tau

Pijush Chakraborty, Markus Zweckstetter
Journal: Essays in Biochemistry
Essays Biochem (2022) 66 (7): 1013–1021.
https://doi.org/10.1042/EBC20220066
Published: 16 December 2022
View article titled, Phase separation of the microtubule-associated protein tau
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Articles

How phosphorylation impacts intrinsically disordered proteins and their function

Estella A. Newcombe, Elise Delaforge, Rasmus Hartmann-Petersen, Karen Skriver, Birthe B. Kragelund
Journal: Essays in Biochemistry
Essays Biochem (2022) 66 (7): 901–913.
https://doi.org/10.1042/EBC20220060
Published: 16 December 2022
View article titled, How phosphorylation impacts intrinsically disordered proteins and their function
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Articles

NMR insights into dynamic, multivalent interactions of intrinsically disordered regions: from discrete complexes to condensates

Rashik Ahmed, Julie D. Forman-Kay
Journal: Essays in Biochemistry
Essays Biochem (2022) 66 (7): 863–873.
https://doi.org/10.1042/EBC20220056
Published: 16 December 2022
View article titled, NMR insights into dynamic, multivalent interactions of intrinsically disordered regions: from discrete complexes to condensates
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Articles

How viral proteins bind short linear motifs and intrinsically disordered domains

Priyanka Madhu, Norman E. Davey, Ylva Ivarsson
Journal: Essays in Biochemistry
Essays Biochem (2022) 66 (7): 935–944.
https://doi.org/10.1042/EBC20220047
Published: 16 December 2022
View article titled, How viral proteins bind short linear motifs and intrinsically disordered domains
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Articles

Unravelling the microscopic characteristics of intrinsically disordered proteins upon liquid–liquid phase separation

Si Wu, Jitao Wen, Sarah Perrett
Journal: Essays in Biochemistry
Essays Biochem (2022) 66 (7): 891–900.
https://doi.org/10.1042/EBC20220148
Published: 16 December 2022
View article titled, Unravelling the microscopic characteristics of intrinsically disordered proteins upon liquid–liquid phase separation
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Articles

Knowing me, knowing you: Self and non-self recognition in plant immunity

Dongdong Ge, In-Cheol Yeo, Libo Shan
Journal: Essays in Biochemistry
Essays Biochem (2022) 66 (5): 447–458.
https://doi.org/10.1042/EBC20210095
Published: 30 September 2022
View article titled, Knowing me, knowing you: Self and non-self recognition in plant immunity
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Articles

Indirect recognition of pathogen effectors by NLRs

Kevin Ao, Xin Li
Journal: Essays in Biochemistry
Essays Biochem (2022) 66 (5): 485–500.
https://doi.org/10.1042/EBC20210097
Published: 30 September 2022
View article titled, Indirect recognition of pathogen effectors by NLRs
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Articles

Unconventional R proteins in the botanical tribe Triticeae

Naveenkumar Athiyannan, Lamia Aouini, Yajun Wang, Simon G. Krattinger
Journal: Essays in Biochemistry
Essays Biochem (2022) 66 (5): 561–569.
https://doi.org/10.1042/EBC20210081
Published: 30 September 2022
View article titled, Unconventional R proteins in the botanical tribe Triticeae
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Articles

Direct recognition of pathogen effectors by plant NLR immune receptors and downstream signalling

Jian Chen, Xiaoxiao Zhang, John P. Rathjen, Peter N. Dodds
Journal: Essays in Biochemistry
Essays Biochem (2022) 66 (5): 471–483.
https://doi.org/10.1042/EBC20210072
Published: 30 September 2022
View article titled, Direct recognition of pathogen effectors by plant NLR immune receptors and downstream signalling
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Articles

Systemic acquired resistance-associated transport and metabolic regulation of salicylic acid and glycerol-3-phosphate

Aardra Kachroo, Huazhen Liu, Xinyu Yuan, Tatsushi Kurokawa, Pradeep Kachroo
Journal: Essays in Biochemistry
Essays Biochem (2022) 66 (5): 673–681.
https://doi.org/10.1042/EBC20210098
Published: 30 September 2022
View article titled, Systemic acquired resistance-associated transport and metabolic regulation of salicylic acid and glycerol-3-phosphate
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Articles

Apoplastic and vascular defences

Martin Darino, Kostya Kanyuka, Kim E. Hammond-Kosack
Journal: Essays in Biochemistry
Essays Biochem (2022) 66 (5): 595–605.
https://doi.org/10.1042/EBC20220159
Published: 30 September 2022
View article titled, Apoplastic and vascular defences
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Articles

Uncovering protein function: from classification to complexes

Rhiannon Morris, Katrina A. Black, Elliott J. Stollar
Journal: Essays in Biochemistry
Essays Biochem (2022) 66 (3): 255–285.
https://doi.org/10.1042/EBC20200108
Published: 10 August 2022
View article titled, Uncovering protein function: from classification to complexes
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Articles

RNA-binding proteins and their role in translational regulation in plants

José Antonio Duarte-Conde, Gemma Sans-Coll, Catharina Merchante
Journal: Essays in Biochemistry
Essays Biochem (2022) 66 (2): 87–97.
https://doi.org/10.1042/EBC20210069
Published: 05 August 2022
View article titled, RNA-binding proteins and their role in translational regulation in plants
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Articles

Ubiquitin ligases at the nexus of plant responses to biotic and abiotic stresses

Sophia L. Stone
Journal: Essays in Biochemistry
Essays Biochem (2022) 66 (2): 123–133.
https://doi.org/10.1042/EBC20210070
Published: 05 August 2022
View article titled, Ubiquitin ligases at the nexus of plant responses to biotic and abiotic stresses
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Articles

E2 ubiquitin-conjugating enzymes (UBCs): drivers of ubiquitin signalling in plants

Carla Brillada, Marco Trujillo
Journal: Essays in Biochemistry
Essays Biochem (2022) 66 (2): 99–110.
https://doi.org/10.1042/EBC20210093
Published: 05 August 2022
View article titled, E2 ubiquitin-conjugating enzymes (UBCs): drivers of ubiquitin signalling in plants
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Includes: Supplementary data
Articles

Understanding SUMO-mediated adaptive responses in plants to improve crop productivity

Lisa Clark, Kawinnat Sue-Ob, Vaishnavi Mukkawar, Andrew R. Jones, Ari Sadanandom
Journal: Essays in Biochemistry
Essays Biochem (2022) 66 (2): 155–168.
https://doi.org/10.1042/EBC20210068
Published: 05 August 2022
View article titled, Understanding SUMO-mediated adaptive responses in plants to improve crop productivity
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Articles

Case study: Biochemistry without borders: a case study utilising infographics

Michelle A. Sahai, Anna Ivanova
Journal: Essays in Biochemistry
Essays Biochem (2022) 66 (1): 65–73.
https://doi.org/10.1042/EBC20210040
Published: 29 April 2022
View article titled, Case study: Biochemistry without borders: a case study utilising infographics
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Articles

PINK1 signalling in neurodegenerative disease

Daniel R. Whiten, Dezerae Cox, Carolyn M. Sue
Journal: Essays in Biochemistry
Essays Biochem (2021) 65 (7): 913–923.
https://doi.org/10.1042/EBC20210036
Published: 22 December 2021
View article titled, PINK1 signalling in neurodegenerative disease
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Articles

RNA-binding protein dysfunction in neurodegeneration

Bastian Popper, Tom Scheidt, Rico Schieweck
Journal: Essays in Biochemistry
Essays Biochem (2021) 65 (7): 975–986.
https://doi.org/10.1042/EBC20210024
Published: 22 December 2021
View article titled, RNA-binding protein dysfunction in neurodegeneration
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Articles

Nuclear receptors: from molecular mechanisms to therapeutics

Daniel E. Frigo, Maria Bondesson, Cecilia Williams
Journal: Essays in Biochemistry
Essays Biochem (2021) 65 (6): 847–856.
https://doi.org/10.1042/EBC20210020
Published: 26 November 2021
View article titled, Nuclear receptors: from molecular mechanisms to therapeutics
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Articles

RNA:DNA triple helices: from peculiar structures to pervasive chromatin regulators

Andreas Adam Greifenstein, SoYoung Jo, Holger Bierhoff
Journal: Essays in Biochemistry
Essays Biochem (2021) 65 (4): 731–740.
https://doi.org/10.1042/EBC20200089
Published: 27 October 2021
View article titled, RNA:DNA triple helices: from peculiar structures to pervasive chromatin regulators
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Articles

Biochemistry: one molecule at a time

Dominika T. Gruszka
Journal: Essays in Biochemistry
Essays Biochem (2021) 65 (1): 1–3.
https://doi.org/10.1042/EBC20210015
Published: 16 April 2021
View article titled, Biochemistry: one molecule at a time
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Articles

Biology on track: single-molecule visualisation of protein dynamics on linear DNA substrates

Gurleen Kaur, Lisanne M. Spenkelink
Journal: Essays in Biochemistry
Essays Biochem (2021) 65 (1): 5–16.
https://doi.org/10.1042/EBC20200019
Published: 16 April 2021
View article titled, Biology on track: single-molecule visualisation of protein dynamics on linear DNA substrates
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Articles

Label-free, mass-sensitive single-molecule imaging using interferometric scattering microscopy

Nikolas Hundt
Journal: Essays in Biochemistry
Essays Biochem (2021) 65 (1): 81–91.
https://doi.org/10.1042/EBC20200023
Published: 16 April 2021
View article titled, Label-free, mass-sensitive single-molecule imaging using interferometric scattering microscopy
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Articles

From folding to function: complex macromolecular reactions unraveled one-by-one with optical tweezers

In Collection
Protein structure and function
Pétur O. Heidarsson, Ciro Cecconi
Journal: Essays in Biochemistry
Essays Biochem (2021) 65 (1): 129–142.
https://doi.org/10.1042/EBC20200024
Published: 16 April 2021
View article titled, From folding to function: complex macromolecular reactions unraveled one-by-one with optical tweezers
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Articles

Modelling single-molecule kinetics of helicase translocation using high-resolution nanopore tweezers (SPRNT)

Jonathan M. Craig, Andrew H. Laszlo, Ian C. Nova, Jens H. Gundlach
Journal: Essays in Biochemistry
Essays Biochem (2021) 65 (1): 109–127.
https://doi.org/10.1042/EBC20200027
Published: 16 April 2021
View article titled, Modelling single-molecule kinetics of helicase translocation using high-resolution nanopore tweezers (SPRNT)
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Articles

An introduction to the themed issue on RNA biology in China

Zhe Wu
Journal: Essays in Biochemistry
Essays Biochem (2020) 64 (6): 863–866.
https://doi.org/10.1042/EBC20200031
Published: 07 December 2020
View article titled, An introduction to the themed issue on RNA biology in China
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Articles

Out or decay: fate determination of nuclear RNAs

Jianshu Wang, Hong Cheng
Journal: Essays in Biochemistry
Essays Biochem (2020) 64 (6): 895–905.
https://doi.org/10.1042/EBC20200005
Published: 07 December 2020
View article titled, Out or decay: fate determination of nuclear RNAs
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Articles

The role of DNA damage response in amyotrophic lateral sclerosis

Yu Sun, Annabel J. Curle, Arshad M. Haider, Gabriel Balmus
Journal: Essays in Biochemistry
Essays Biochem (2020) 64 (5): 847–861.
https://doi.org/10.1042/EBC20200002
Published: 20 October 2020
View article titled, The role of DNA damage response in amyotrophic lateral sclerosis
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Articles

Uncovering protein structure

In Collection
Protein structure and function
Elliott J Stollar, David P Smith
Journal: Essays in Biochemistry
Essays Biochem (2020) 64 (4): 649–680.
https://doi.org/10.1042/EBC20190042
Published: 25 September 2020
View article titled, Uncovering protein structure
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Articles

Kinetochore–microtubule coupling mechanisms mediated by the Ska1 complex and Cdt1

Amit Rahi, Manas Chakraborty, Kristen Vosberg, Dileep Varma
Journal: Essays in Biochemistry
Essays Biochem (2020) 64 (2): 337–347.
https://doi.org/10.1042/EBC20190075
Published: 26 August 2020
View article titled, Kinetochore–microtubule coupling mechanisms mediated by the Ska1 complex and Cdt1
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Articles

The whole is greater than the sum of its parts: at the intersection of order, disorder, and kinetochore function

Margaux R. Audett, Thomas J. Maresca
Journal: Essays in Biochemistry
Essays Biochem (2020) 64 (2): 349–358.
https://doi.org/10.1042/EBC20190069
Published: 05 August 2020
View article titled, The whole is greater than the sum of its parts: at the intersection of order, disorder, and kinetochore function
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Articles

Mechanism and significance of chromosome damage repair by homologous recombination

Ajinkya S. Kawale, Patrick Sung
Journal: Essays in Biochemistry
Essays Biochem (2020) 64 (5): 779–790.
https://doi.org/10.1042/EBC20190093
Published: 05 August 2020
View article titled, Mechanism and significance of chromosome damage repair by homologous recombination
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Articles

Structural view of the yeast Dam1 complex, a ring-shaped molecular coupler for the dynamic microtubule end

Shaowen Wu, Ekaterina L. Grishchuk
Journal: Essays in Biochemistry
Essays Biochem (2020) 64 (2): 359–370.
https://doi.org/10.1042/EBC20190079
Published: 24 June 2020
View article titled, Structural view of the yeast Dam1 complex, a ring-shaped molecular coupler for the dynamic microtubule end
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Articles

Leaving no-one behind: how CENP-E facilitates chromosome alignment

Benjamin Craske, Julie P.I. Welburn
Journal: Essays in Biochemistry
Essays Biochem (2020) 64 (2): 313–324.
https://doi.org/10.1042/EBC20190073
Published: 29 April 2020
View article titled, Leaving no-one behind: how CENP-E facilitates chromosome alignment
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Articles

The role of DUBs in the post-translational control of cell migration

Guillem Lambies, Antonio García de Herreros, Víctor M. Díaz
Journal: Essays in Biochemistry
Essays Biochem (2019) 63 (5): 579–594.
https://doi.org/10.1042/EBC20190022
Published: 11 October 2019
View article titled, The role of DUBs in the post-translational control of cell migration
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