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Articles

Functional biology and biotechnology of thermophilic viruses

Ryan K. Doss, Marike Palmer, David A. Mead, Brian P. Hedlund
Journal: Essays in Biochemistry
Essays Biochem (2023) EBC20220209.
DOI: https://doi.org/10.1042/EBC20220209
Published: 24 May 2023
View article titled, Functional biology and biotechnology of thermophilic viruses
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Articles

Mucin utilization by gut microbiota: recent advances on characterization of key enzymes

Grete Raba, Ana S. Luis
Journal: Essays in Biochemistry
Essays Biochem (2023) 67 (3): 345–353.
DOI: https://doi.org/10.1042/EBC20220121
Published: 18 April 2023
View article titled, Mucin utilization by gut microbiota: recent advances on characterization of key enzymes
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Articles

Butyrate-producing colonic clostridia: picky glycan utilization specialists

Maria Louise Leth, Michael Jakob Pichler, Maher Abou Hachem
Journal: Essays in Biochemistry
Essays Biochem (2023) 67 (3): 415–428.
DOI: https://doi.org/10.1042/EBC20220125
Published: 18 April 2023
View article titled, Butyrate-producing colonic clostridia: picky glycan utilization specialists
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Articles

Functions and specificity of bacterial carbohydrate sulfatases targeting host glycans

Ana S. Luis, Edwin A. Yates, Alan Cartmell
Journal: Essays in Biochemistry
Essays Biochem (2023) 67 (3): 429–442.
DOI: https://doi.org/10.1042/EBC20220120
Published: 18 April 2023
View article titled, Functions and specificity of bacterial carbohydrate sulfatases targeting host glycans
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Articles

Copper radical oxidases: galactose oxidase, glyoxal oxidase, and beyond!

Jessica K. Fong, Harry Brumer
Journal: Essays in Biochemistry
Essays Biochem (2023) 67 (3): 597–613.
DOI: https://doi.org/10.1042/EBC20220124
Published: 18 April 2023
View article titled, Copper radical oxidases: galactose oxidase, glyoxal oxidase, and beyond!
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Articles

Role of carbohydrate-active enzymes in mycorrhizal symbioses

Yuhua Gong, Annie Lebreton, Feng Zhang, Francis Martin
Journal: Essays in Biochemistry
Essays Biochem (2023) 67 (3): 471–478.
DOI: https://doi.org/10.1042/EBC20220127
Published: 18 April 2023
View article titled, Role of carbohydrate-active enzymes in mycorrhizal symbioses
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Articles

Glucuronoyl esterases – enzymes to decouple lignin and carbohydrates and enable better utilization of renewable plant biomass

Johan Larsbrink, Leila Lo Leggio
Journal: Essays in Biochemistry
Essays Biochem (2023) 67 (3): 493–503.
DOI: https://doi.org/10.1042/EBC20220155
Published: 18 April 2023
View article titled, Glucuronoyl esterases – enzymes to decouple lignin and carbohydrates and enable better utilization of renewable plant biomass
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Articles

A special issue of Essays in Biochemistry on current advances about CAZymes and their impact and key role in human health and environment

Mirjam Czjzek, Elizabeth Ficko-Blean, Jean-Guy Berrin
Journal: Essays in Biochemistry
Essays Biochem (2023) 67 (3): 325–329.
DOI: https://doi.org/10.1042/EBC20230004
Published: 18 April 2023
View article titled, A special issue of Essays in Biochemistry on current advances about CAZymes and their impact and key role in human health and environment
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Articles

Structure and function of microbial α-l-fucosidases: a mini review

Haiyang Wu, C. David Owen, Nathalie Juge
Journal: Essays in Biochemistry
Essays Biochem (2023) 67 (3): 399–414.
DOI: https://doi.org/10.1042/EBC20220158
Published: 18 April 2023
View article titled, Structure and function of microbial α-l-fucosidases: a mini review
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Includes: Supplementary data
Articles

Glycoside hydrolases active on microbial exopolysaccharide α-glucans: structures and function

Takatsugu Miyazaki
Journal: Essays in Biochemistry
Essays Biochem (2023) 67 (3): 505–520.
DOI: https://doi.org/10.1042/EBC20220219
Published: 18 April 2023
View article titled, Glycoside hydrolases active on microbial exopolysaccharide α-glucans: structures and function
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Articles

Carbohydrate esterases involved in deacetylation of food components by the human gut microbiota

Sabina Leanti La Rosa, Lars J. Lindstad, Bjørge Westereng
Journal: Essays in Biochemistry
Essays Biochem (2023) 67 (3): 443–454.
DOI: https://doi.org/10.1042/EBC20220161
Published: 18 April 2023
View article titled, Carbohydrate esterases involved in deacetylation of food components by the human gut microbiota
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Articles

The role of the Mediator complex in fungal pathogenesis and response to antifungal agents

James O'Connor-Moneley, Leenah Alaalm, Gary P. Moran, Derek J. Sullivan
Journal: Essays in Biochemistry
Essays Biochem (2023) EBC20220238.
DOI: https://doi.org/10.1042/EBC20220238
Published: 04 April 2023
View article titled, The role of the Mediator complex in fungal pathogenesis and response to antifungal agents
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Articles

Evolution and functional diversification of yeast sugar transporters

Lorena Donzella, Maria João Sousa, John P. Morrissey
Journal: Essays in Biochemistry
Essays Biochem (2023) EBC20220233.
DOI: https://doi.org/10.1042/EBC20220233
Published: 17 March 2023
View article titled, Evolution and functional diversification of yeast sugar transporters
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Includes: Supplementary data
Articles

Gliotoxin and related metabolites as zinc chelators: implications and exploitation to overcome antimicrobial resistance

Shane G. Downes, Sean Doyle, Gary W. Jones, Rebecca A. Owens
Journal: Essays in Biochemistry
Essays Biochem (2023) EBC20220222.
DOI: https://doi.org/10.1042/EBC20220222
Published: 06 March 2023
View article titled, Gliotoxin and related metabolites as zinc chelators: implications and exploitation to overcome antimicrobial resistance
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Articles

Functional amyloid in a lipid-like environment: a merry dance of many steps

Daniel E. Otzen
Journal: Essays in Biochemistry
Essays Biochem (2022) 66 (7): 1035–1046.
DOI: https://doi.org/10.1042/EBC20220062
Published: 16 December 2022
View article titled, Functional amyloid in a lipid-like environment: a merry dance of many steps
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Articles

3D Bioprinting for fabrication of tissue models of COVID-19 infection

Anisha Kabir, Pallab Datta, Julia Oh, Adam Williams, Veli Ozbolat, Derya Unutmaz, Ibrahim T. Ozbolat
Journal: Essays in Biochemistry
Essays Biochem (2021) 65 (3): 503–518.
DOI: https://doi.org/10.1042/EBC20200129
Published: 06 August 2021
View article titled, 3D Bioprinting for fabrication of tissue models of COVID-19 infection
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Articles

Microbial cell factories: a biotechnology journey across species

Pablo I. Nikel, Diethard Mattanovich
Journal: Essays in Biochemistry
Essays Biochem (2021) 65 (2): 143–145.
DOI: https://doi.org/10.1042/EBC20210037
Published: 26 July 2021
View article titled, Microbial cell factories: a biotechnology journey across species
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Articles

Lactic acid bacteria: little helpers for many human tasks

Michael Sauer, Nam Soo Han
Journal: Essays in Biochemistry
Essays Biochem (2021) 65 (2): 163–171.
DOI: https://doi.org/10.1042/EBC20200133
Published: 26 July 2021
View article titled, Lactic acid bacteria: little helpers for many human tasks
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Articles

Acinetobacter baylyi ADP1—naturally competent for synthetic biology

Suvi Santala, Ville Santala
Journal: Essays in Biochemistry
Essays Biochem (2021) 65 (2): 309–318.
DOI: https://doi.org/10.1042/EBC20200136
Published: 26 July 2021
View article titled, Acinetobacter baylyi ADP1—naturally competent for synthetic biology
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Articles

Shewanella oneidensis MR-1 as a bacterial platform for electro-biotechnology

Sota Ikeda, Yuki Takamatsu, Miyu Tsuchiya, Keigo Suga, Yugo Tanaka, Atsushi Kouzuma, Kazuya Watanabe
Journal: Essays in Biochemistry
Essays Biochem (2021) 65 (2): 355–364.
DOI: https://doi.org/10.1042/EBC20200178
Published: 26 July 2021
View article titled, Shewanella oneidensis MR-1 as a bacterial platform for electro-biotechnology
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Articles

Metabolic engineering of Vibrio natriegens

Felix Thoma, Bastian Blombach
Journal: Essays in Biochemistry
Essays Biochem (2021) 65 (2): 381–392.
DOI: https://doi.org/10.1042/EBC20200135
Published: 26 July 2021
View article titled, Metabolic engineering of Vibrio natriegens
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Articles

Perspectives for the application of Ustilaginaceae as biotech cell factories

Nick Wierckx, Katharina Miebach, Nina Ihling, Kai P. Hussnaetter, Jochen Büchs, Kerstin Schipper
Journal: Essays in Biochemistry
Essays Biochem (2021) 65 (2): 365–379.
DOI: https://doi.org/10.1042/EBC20200141
Published: 26 July 2021
View article titled, Perspectives for the application of Ustilaginaceae as biotech cell factories
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Articles

Halomonas as a chassis

Jian-Wen Ye, Guo-Qiang Chen
Journal: Essays in Biochemistry
Essays Biochem (2021) 65 (2): 393–403.
DOI: https://doi.org/10.1042/EBC20200159
Published: 26 July 2021
View article titled, Halomonas as a chassis
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Includes: Supplementary data
Articles

Something old, something new: challenges and developments in Aspergillus niger biotechnology

Timothy C. Cairns, Lars Barthel, Vera Meyer
Journal: Essays in Biochemistry
Essays Biochem (2021) 65 (2): 213–224.
DOI: https://doi.org/10.1042/EBC20200139
Published: 26 July 2021
View article titled, Something old, something new: challenges and developments in Aspergillus niger biotechnology
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Articles

Recombinant protein secretion by Bacillus subtilis and Lactococcus lactis : pathways, applications, and innovation potential

Jolanda Neef, Jan Maarten van Dijl, Girbe Buist
Journal: Essays in Biochemistry
Essays Biochem (2021) 65 (2): 187–195.
DOI: https://doi.org/10.1042/EBC20200171
Published: 26 July 2021
View article titled, Recombinant protein secretion by Bacillus subtilis and Lactococcus lactis : pathways, applications, and innovation potential
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Includes: Supplementary data
Articles

The Design-Build-Test-Learn cycle for metabolic engineering of Streptomycetes

Christopher M. Whitford, Pablo Cruz-Morales, Jay D. Keasling, Tilmann Weber
Journal: Essays in Biochemistry
Essays Biochem (2021) 65 (2): 261–275.
DOI: https://doi.org/10.1042/EBC20200132
Published: 26 July 2021
View article titled, The Design-Build-Test-Learn cycle for metabolic engineering of Streptomycetes
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Articles

Established tools and emerging trends for the production of recombinant proteins and metabolites in Pichia pastoris

Sonakshi De, Diethard Mattanovich, Pau Ferrer, Brigitte Gasser
Journal: Essays in Biochemistry
Essays Biochem (2021) 65 (2): 293–307.
DOI: https://doi.org/10.1042/EBC20200138
Published: 26 July 2021
View article titled, Established tools and emerging trends for the production of recombinant proteins and metabolites in Pichia pastoris
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Articles

Production of proteins and commodity chemicals using engineered Bacillus subtilis platform strain

Quanwei Zhang, Yaokang Wu, Mengyue Gong, Hongzhi Zhang, Yanfeng Liu, Xueqin Lv, Jianghua Li, Guocheng Du, Long Liu
Journal: Essays in Biochemistry
Essays Biochem (2021) 65 (2): 173–185.
DOI: https://doi.org/10.1042/EBC20210011
Published: 26 July 2021
View article titled, Production of proteins and commodity chemicals using engineered Bacillus subtilis platform strain
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Articles

Harnessing the yeast Saccharomyces cerevisiae for the production of fungal secondary metabolites

Guokun Wang, Douglas B. Kell, Irina Borodina
Journal: Essays in Biochemistry
Essays Biochem (2021) 65 (2): 277–291.
DOI: https://doi.org/10.1042/EBC20200137
Published: 26 July 2021
View article titled, Harnessing the yeast Saccharomyces cerevisiae for the production of fungal secondary metabolites
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Articles

Advances in metabolic engineering of Corynebacterium glutamicum to produce high-value active ingredients for food, feed, human health, and well-being

Sabrina Wolf, Judith Becker, Yota Tsuge, Hideo Kawaguchi, Akihiko Kondo, Jan Marienhagen, Michael Bott, Volker F. Wendisch, Christoph Wittmann
Journal: Essays in Biochemistry
Essays Biochem (2021) 65 (2): 197–212.
DOI: https://doi.org/10.1042/EBC20200134
Published: 26 July 2021
View article titled, Advances in metabolic engineering of Corynebacterium glutamicum to produce high-value active ingredients for food, feed, human health, and well-being
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Articles

Saccharomyces cerevisiae strains used industrially for bioethanol production

Ana Paula Jacobus, Jeferson Gross, John H. Evans, Sandra Regina Ceccato-Antonini, Andreas Karoly Gombert
Journal: Essays in Biochemistry
Essays Biochem (2021) 65 (2): 147–161.
DOI: https://doi.org/10.1042/EBC20200160
Published: 26 July 2021
View article titled, Saccharomyces cerevisiae strains used industrially for bioethanol production
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Articles

Towards robust Pseudomonas cell factories to harbour novel biosynthetic pathways

Nora Lisa Bitzenhofer, Luzie Kruse, Stephan Thies, Benedikt Wynands, Thorsten Lechtenberg, Jakob Rönitz, Ekaterina Kozaeva, Nicolas Thilo Wirth, Christian Eberlein, Karl-Erich Jaeger, Pablo Iván Nikel, Hermann J. Heipieper, Nick Wierckx, Anita Loeschcke
Journal: Essays in Biochemistry
Essays Biochem (2021) 65 (2): 319–336.
DOI: https://doi.org/10.1042/EBC20200173
Published: 26 July 2021
View article titled, Towards robust Pseudomonas cell factories to harbour novel biosynthetic pathways
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Articles

Challenges of analysing stochastic gene expression in bacteria using single-cell time-lapse experiments

Georgeos Hardo, Somenath Bakshi
Journal: Essays in Biochemistry
Essays Biochem (2021) 65 (1): 67–79.
DOI: https://doi.org/10.1042/EBC20200015
Published: 16 April 2021
View article titled, Challenges of analysing stochastic gene expression in bacteria using single-cell time-lapse experiments
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Articles

Genome-driven cell engineering review: in vivo and in silico metabolic and genome engineering

Sophie Landon, Joshua Rees-Garbutt, Lucia Marucci, Claire Grierson
Journal: Essays in Biochemistry
Essays Biochem (2019) 63 (2): 267–284.
DOI: https://doi.org/10.1042/EBC20180045
Published: 26 June 2019
View article titled, Genome-driven cell engineering review: in vivo and in silico metabolic and genome engineering
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Articles

From single bacterial cell imaging towards in vivo single-molecule biochemistry studies

Ulrike Endesfelder
Journal: Essays in Biochemistry
Essays Biochem (2019) 63 (2): 187–196.
DOI: https://doi.org/10.1042/EBC20190002
Published: 13 June 2019
View article titled, From single bacterial cell imaging towards in vivo single-molecule biochemistry studies
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Articles

Adaptation processes that build CRISPR immunity: creative destruction, updated

Chun H. Lau, Ryan Reeves, Edward L. Bolt
Journal: Essays in Biochemistry
Essays Biochem (2019) 63 (2): 227–235.
DOI: https://doi.org/10.1042/EBC20180073
Published: 11 June 2019
View article titled, Adaptation processes that build CRISPR immunity: creative destruction, updated
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Articles

Experimental evolution in photoautotrophic microorganisms as a means of enhancing chloroplast functions

Dario Leister
Journal: Essays in Biochemistry
Essays Biochem (2018) 62 (1): 77–84.
DOI: https://doi.org/10.1042/EBC20170010
Published: 08 September 2017
View article titled, Experimental evolution in photoautotrophic microorganisms as a means of enhancing chloroplast functions
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Articles

Cluster assembly in nitrogenase

Nathaniel S. Sickerman, Lee A. Rettberg, Chi Chung Lee, Yilin Hu, Markus W. Ribbe
Journal: Essays in Biochemistry
Essays Biochem (2017) 61 (2): 271–279.
DOI: https://doi.org/10.1042/EBC20160071
Published: 09 May 2017
View article titled, Cluster assembly in nitrogenase
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Articles

Transition metals at the host–pathogen interface: how Neisseria exploit human metalloproteins for acquiring iron and zinc

Wilma Neumann, Rose C. Hadley, Elizabeth M. Nolan
Journal: Essays in Biochemistry
Essays Biochem (2017) 61 (2): 211–223.
DOI: https://doi.org/10.1042/EBC20160084
Published: 09 May 2017
View article titled, Transition metals at the host–pathogen interface: how Neisseria exploit human metalloproteins for acquiring iron and zinc
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Articles

Metallochaperones and metalloregulation in bacteria

Daiana A. Capdevila, Katherine A. Edmonds, David P. Giedroc
Journal: Essays in Biochemistry
Essays Biochem (2017) 61 (2): 177–200.
DOI: https://doi.org/10.1042/EBC20160076
Published: 09 May 2017
View article titled, Metallochaperones and metalloregulation in bacteria
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Articles

Fitness costs associated with the acquisition of antibiotic resistance

Sara Hernando-Amado, Fernando Sanz-García, Paula Blanco, José L. Martínez
Journal: Essays in Biochemistry
Essays Biochem (2017) 61 (1): 37–48.
DOI: https://doi.org/10.1042/EBC20160057
Published: 03 March 2017
View article titled, Fitness costs associated with the acquisition of antibiotic resistance
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Articles

Insights into drug resistance mechanisms in Clostridium difficile

Phurt Harnvoravongchai, Methinee Pipatthana, Surang Chankhamhaengdecha, Tavan Janvilisri
Journal: Essays in Biochemistry
Essays Biochem (2017) 61 (1): 81–88.
DOI: https://doi.org/10.1042/EBC20160062
Published: 03 March 2017
View article titled, Insights into drug resistance mechanisms in Clostridium difficile
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Articles

Innovative approaches to treat Staphylococcus aureus biofilm-related infections

Katharina Richter, Freija Van den Driessche, Tom Coenye
Journal: Essays in Biochemistry
Essays Biochem (2017) 61 (1): 61–70.
DOI: https://doi.org/10.1042/EBC20160056
Published: 03 March 2017
View article titled, Innovative approaches to treat Staphylococcus aureus biofilm-related infections
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Articles

Impact of anthropogenic activities on the dissemination of antibiotic resistance across ecological boundaries

Vijay Tripathi, Eddie Cytryn
Journal: Essays in Biochemistry
Essays Biochem (2017) 61 (1): 11–21.
DOI: https://doi.org/10.1042/EBC20160054
Published: 03 March 2017
View article titled, Impact of anthropogenic activities on the dissemination of antibiotic resistance across ecological boundaries
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Articles

Development and transmission of antimicrobial resistance among Gram-negative bacteria in animals and their public health impact

Shewli Mukerji, Mark O’Dea, Mary Barton, Roy Kirkwood, Terence Lee, Sam Abraham
Journal: Essays in Biochemistry
Essays Biochem (2017) 61 (1): 23–35.
DOI: https://doi.org/10.1042/EBC20160055
Published: 03 March 2017
View article titled, Development and transmission of antimicrobial resistance among Gram-negative bacteria in animals and their public health impact
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Articles

Antibiotic tolerance and the alternative lifestyles of Staphylococcus aureus

Long M.G. Bui, Brian P. Conlon, Stephen P. Kidd
Journal: Essays in Biochemistry
Essays Biochem (2017) 61 (1): 71–79.
DOI: https://doi.org/10.1042/EBC20160061
Published: 03 March 2017
View article titled, Antibiotic tolerance and the alternative lifestyles of Staphylococcus aureus
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Articles

Antimicrobial resistance in healthcare, agriculture and the environment: the biochemistry behind the headlines

Henrietta Venter, Michael L. Henningsen, Stephanie L. Begg
Journal: Essays in Biochemistry
Essays Biochem (2017) 61 (1): 1–10.
DOI: https://doi.org/10.1042/EBC20160053
Published: 03 March 2017
View article titled, Antimicrobial resistance in healthcare, agriculture and the environment: the biochemistry behind the headlines
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Articles

Intrinsic, adaptive and acquired antimicrobial resistance in Gram-negative bacteria

Mohsen Arzanlou, Wern Chern Chai, Henrietta Venter
Journal: Essays in Biochemistry
Essays Biochem (2017) 61 (1): 49–59.
DOI: https://doi.org/10.1042/EBC20160063
Published: 03 March 2017
View article titled, Intrinsic, adaptive and acquired antimicrobial resistance in Gram-negative bacteria
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Articles

Resistance to antifungal therapies

Rajendra Prasad, Atanu Banerjee, Abdul Haseeb Shah
Journal: Essays in Biochemistry
Essays Biochem (2017) 61 (1): 157–166.
DOI: https://doi.org/10.1042/EBC20160067
Published: 03 March 2017
View article titled, Resistance to antifungal therapies
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Articles

The role played by drug efflux pumps in bacterial multidrug resistance

Mohsen Chitsaz, Melissa H. Brown
Journal: Essays in Biochemistry
Essays Biochem (2017) 61 (1): 127–139.
DOI: https://doi.org/10.1042/EBC20160064
Published: 03 March 2017
View article titled, The role played by drug efflux pumps in bacterial multidrug resistance
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