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Articles

Computational methods for processing and interpreting mass spectrometry-based metabolomics

Leonardo Perez de Souza, Alisdair R. Fernie
Journal: Essays in Biochemistry
Essays Biochem (2023) EBC20230019.
https://doi.org/10.1042/EBC20230019
Published: 24 November 2023
View article titled, Computational methods for processing and interpreting mass spectrometry-based metabolomics
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Articles

The use of immunoaffinity purification approaches coupled with LC-MS/MS offers a powerful strategy to identify protein complexes in filamentous fungi

Ingo Bauer, Özlem Sarikaya Bayram, Özgür Bayram
Journal: Essays in Biochemistry
Essays Biochem (2023) 67 (5): 877–892.
https://doi.org/10.1042/EBC20220253
Published: 13 September 2023
View article titled, The use of immunoaffinity purification approaches coupled with LC-MS/MS offers a powerful strategy to identify protein complexes in filamentous fungi
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Articles

A special issue of Essays in Biochemistry on current advances about CAZymes and their impact and key role in human health and environment

Mirjam Czjzek, Elizabeth Ficko-Blean, Jean-Guy Berrin
Journal: Essays in Biochemistry
Essays Biochem (2023) 67 (3): 325–329.
https://doi.org/10.1042/EBC20230004
Published: 18 April 2023
View article titled, A special issue of Essays in Biochemistry on current advances about CAZymes and their impact and key role in human health and environment
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Articles

N-glycan breakdown by bacterial CAZymes

Lucy I. Crouch
Journal: Essays in Biochemistry
Essays Biochem (2023) 67 (3): 373–385.
https://doi.org/10.1042/EBC20220256
Published: 18 April 2023
View article titled, N-glycan breakdown by bacterial CAZymes
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Articles

Hemicellulolytic enzymes in lignocellulose processing

Heidi Østby, Anikó Várnai
Journal: Essays in Biochemistry
Essays Biochem (2023) 67 (3): 533–550.
https://doi.org/10.1042/EBC20220154
Published: 18 April 2023
View article titled, Hemicellulolytic enzymes in lignocellulose processing
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Articles

A special issue of Essays in Biochemistry on structural mass spectrometry

Hannah M. Britt, Rebecca Beveridge, Antonio N. Calabrese
Journal: Essays in Biochemistry
Essays Biochem (2023) 67 (2): 147–149.
https://doi.org/10.1042/EBC20230006
Published: 29 March 2023
View article titled, A special issue of Essays in Biochemistry on structural mass spectrometry
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Articles

Fundamentals of HDX-MS

Vanesa Vinciauskaite, Glenn R. Masson
Journal: Essays in Biochemistry
Essays Biochem (2023) 67 (2): 301–314.
https://doi.org/10.1042/EBC20220111
Published: 29 March 2023
View article titled, Fundamentals of HDX-MS
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Articles

Seeing the complete picture: proteins in top-down mass spectrometry

Tanja Habeck, Frederik Lermyte
Journal: Essays in Biochemistry
Essays Biochem (2023) 67 (2): 283–300.
https://doi.org/10.1042/EBC20220098
Published: 29 March 2023
View article titled, Seeing the complete picture: proteins in top-down mass spectrometry
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Articles

Mass spectrometric insights into protein aggregation

Tara L. Pukala
Journal: Essays in Biochemistry
Essays Biochem (2023) 67 (2): 243–253.
https://doi.org/10.1042/EBC20220103
Published: 29 March 2023
View article titled, Mass spectrometric insights into protein aggregation
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Articles

Developments in rapid hydrogen–deuterium exchange methods

Vimanda Chow, Esther Wolf, Cristina Lento, Derek J. Wilson
Journal: Essays in Biochemistry
Essays Biochem (2023) 67 (2): 165–174.
https://doi.org/10.1042/EBC20220174
Published: 29 March 2023
View article titled, Developments in rapid hydrogen–deuterium exchange methods
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Articles

Protein–RNA interactions: from mass spectrometry to drug discovery

Benjamin Steinmetz, Izabela Smok, Maria Bikaki, Alexander Leitner
Journal: Essays in Biochemistry
Essays Biochem (2023) 67 (2): 175–186.
https://doi.org/10.1042/EBC20220177
Published: 29 March 2023
View article titled, Protein–RNA interactions: from mass spectrometry to drug discovery
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Articles

Hydrogen/deuterium exchange-mass spectrometry of integral membrane proteins in native-like environments: current scenario and the way forward

Waqas Javed, Damon Griffiths, Argyris Politis
Journal: Essays in Biochemistry
Essays Biochem (2023) 67 (2): 187–200.
https://doi.org/10.1042/EBC20220173
Published: 29 March 2023
View article titled, Hydrogen/deuterium exchange-mass spectrometry of integral membrane proteins in native-like environments: current scenario and the way forward
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Articles

Shapeshifting proteins: the role of structural disorder and conformational plasticity in physiology and disease

Samrat Mukhopadhyay
Journal: Essays in Biochemistry
Essays Biochem (2022) 66 (7): 817–819.
https://doi.org/10.1042/EBC20220197
Published: 16 December 2022
View article titled, Shapeshifting proteins: the role of structural disorder and conformational plasticity in physiology and disease
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Articles

Functional benefit of structural disorder for the replication of measles, Nipah and Hendra viruses

Frank Gondelaud, Giulia Pesce, Juliet F. Nilsson, Christophe Bignon, Denis Ptchelkine, Denis Gerlier, Cyrille Mathieu, Sonia Longhi
Journal: Essays in Biochemistry
Essays Biochem (2022) 66 (7): 915–934.
https://doi.org/10.1042/EBC20220045
Published: 16 December 2022
View article titled, Functional benefit of structural disorder for the replication of measles, Nipah and Hendra viruses
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Includes: Supplementary data
Articles

CRISPR screening in cancer stem cells

Bei Wang, Alan S.L. Wong
Journal: Essays in Biochemistry
Essays Biochem (2022) 66 (4): 305–318.
https://doi.org/10.1042/EBC20220009
Published: 16 September 2022
View article titled, CRISPR screening in cancer stem cells
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Articles

Engagement with video content in the blended classroom

David P. Smith, Nigel J. Francis
Journal: Essays in Biochemistry
Essays Biochem (2022) 66 (1): 5–10.
https://doi.org/10.1042/EBC20210055
Published: 29 April 2022
View article titled, Engagement with video content in the blended classroom
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Articles

Perspective on pros and cons of microlearning in health education

Eser Yıldırım Sozmen
Journal: Essays in Biochemistry
Essays Biochem (2022) 66 (1): 39–44.
https://doi.org/10.1042/EBC20210047
Published: 29 April 2022
View article titled, Perspective on pros and cons of microlearning in health education
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Articles

Case Study: Using H5P to design and deliver interactive laboratory practicals

Amanda J. Unsworth, Mareike G. Posner
Journal: Essays in Biochemistry
Essays Biochem (2022) 66 (1): 19–27.
https://doi.org/10.1042/EBC20210057
Published: 29 April 2022
View article titled, Case Study: Using H5P to design and deliver interactive laboratory practicals
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Articles

Case study: Co-creating a flipped feed-in approach to a virtual biochemistry lab assessment: increasing student achievement and engagement in a large, diverse cohort

Shabana Cassambai, Hannah Bridge, Palak K. Gill, Similoluwa Shobaloju, Tiziana Sgamma, Jo V. Rushworth
Journal: Essays in Biochemistry
Essays Biochem (2022) 66 (1): 29–37.
https://doi.org/10.1042/EBC20210051
Published: 29 April 2022
View article titled, Case study: Co-creating a flipped feed-in approach to a virtual biochemistry lab assessment: increasing student achievement and engagement in a large, diverse cohort
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Articles

Case Study: CRISPR 101 – a novel online learning course harnessing innovative ways to teach a complex biomolecular technology

Martin Pal, Nicki Cranna, Marco J. Herold, Keely Bumsted O’Brien
Journal: Essays in Biochemistry
Essays Biochem (2022) 66 (1): 11–18.
https://doi.org/10.1042/EBC20220024
Published: 29 April 2022
View article titled, Case Study: CRISPR 101 – a novel online learning course harnessing innovative ways to teach a complex biomolecular technology
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Articles

Steroid receptor-coregulator transcriptional complexes: new insights from CryoEM

Ping Yi, Xinzhe Yu, Zhao Wang, Bert W. O'Malley
Journal: Essays in Biochemistry
Essays Biochem (2021) 65 (6): 857–866.
https://doi.org/10.1042/EBC20210019
Published: 26 November 2021
View article titled, Steroid receptor-coregulator transcriptional complexes: new insights from CryoEM
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Articles

Principles of synthetic biology

Kathryn L. Garner
Journal: Essays in Biochemistry
Essays Biochem (2021) 65 (5): 791–811.
https://doi.org/10.1042/EBC20200059
Published: 02 November 2021
View article titled, Principles of synthetic biology
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Articles

So you want to express your protein in Escherichia coli ?

Aatir A. Tungekar, Angel Castillo-Corujo, Lloyd W. Ruddock
Journal: Essays in Biochemistry
Essays Biochem (2021) 65 (2): 247–260.
https://doi.org/10.1042/EBC20200170
Published: 26 July 2021
View article titled, So you want to express your protein in Escherichia coli ?
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Articles

Halomonas as a chassis

Jian-Wen Ye, Guo-Qiang Chen
Journal: Essays in Biochemistry
Essays Biochem (2021) 65 (2): 393–403.
https://doi.org/10.1042/EBC20200159
Published: 26 July 2021
View article titled, Halomonas as a chassis
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Includes: Supplementary data
Articles

Production of proteins and commodity chemicals using engineered Bacillus subtilis platform strain

Quanwei Zhang, Yaokang Wu, Mengyue Gong, Hongzhi Zhang, Yanfeng Liu, Xueqin Lv, Jianghua Li, Guocheng Du, Long Liu
Journal: Essays in Biochemistry
Essays Biochem (2021) 65 (2): 173–185.
https://doi.org/10.1042/EBC20210011
Published: 26 July 2021
View article titled, Production of proteins and commodity chemicals using engineered Bacillus subtilis platform strain
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Articles

Microbial cell factories for the production of polyhydroxyalkanoates

Dillirani Nagarajan, Ganies Riza Aristya, Yu-Ju Lin, Jui-Jen Chang, Hong-Wei Yen, Jo-Shu Chang
Journal: Essays in Biochemistry
Essays Biochem (2021) 65 (2): 337–353.
https://doi.org/10.1042/EBC20200142
Published: 26 July 2021
View article titled, Microbial cell factories for the production of polyhydroxyalkanoates
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Articles

Biochemistry: one molecule at a time

Dominika T. Gruszka
Journal: Essays in Biochemistry
Essays Biochem (2021) 65 (1): 1–3.
https://doi.org/10.1042/EBC20210015
Published: 16 April 2021
View article titled, Biochemistry: one molecule at a time
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Articles

Biology on track: single-molecule visualisation of protein dynamics on linear DNA substrates

Gurleen Kaur, Lisanne M. Spenkelink
Journal: Essays in Biochemistry
Essays Biochem (2021) 65 (1): 5–16.
https://doi.org/10.1042/EBC20200019
Published: 16 April 2021
View article titled, Biology on track: single-molecule visualisation of protein dynamics on linear DNA substrates
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Articles

Nanopores: a versatile tool to study protein dynamics

In Collection
Protein structure and function
Sonja Schmid, Cees Dekker
Journal: Essays in Biochemistry
Essays Biochem (2021) 65 (1): 93–107.
https://doi.org/10.1042/EBC20200020
Published: 16 April 2021
View article titled, Nanopores: a versatile tool to study protein dynamics
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Articles

Label-free, mass-sensitive single-molecule imaging using interferometric scattering microscopy

Nikolas Hundt
Journal: Essays in Biochemistry
Essays Biochem (2021) 65 (1): 81–91.
https://doi.org/10.1042/EBC20200023
Published: 16 April 2021
View article titled, Label-free, mass-sensitive single-molecule imaging using interferometric scattering microscopy
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Articles

From folding to function: complex macromolecular reactions unraveled one-by-one with optical tweezers

In Collection
Protein structure and function
Pétur O. Heidarsson, Ciro Cecconi
Journal: Essays in Biochemistry
Essays Biochem (2021) 65 (1): 129–142.
https://doi.org/10.1042/EBC20200024
Published: 16 April 2021
View article titled, From folding to function: complex macromolecular reactions unraveled one-by-one with optical tweezers
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Articles

Studying chromosome biology with single-molecule resolution in Xenopus laevis egg extracts

George Cameron, Hasan Yardimci
Journal: Essays in Biochemistry
Essays Biochem (2021) 65 (1): 17–26.
https://doi.org/10.1042/EBC20200026
Published: 16 April 2021
View article titled, Studying chromosome biology with single-molecule resolution in Xenopus laevis egg extracts
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Articles

An introduction to the themed issue on RNA biology in China

Zhe Wu
Journal: Essays in Biochemistry
Essays Biochem (2020) 64 (6): 863–866.
https://doi.org/10.1042/EBC20200031
Published: 07 December 2020
View article titled, An introduction to the themed issue on RNA biology in China
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Articles

An emerging role of chromatin-interacting RNA-binding proteins in transcription regulation

Xian Du, Rui Xiao
Journal: Essays in Biochemistry
Essays Biochem (2020) 64 (6): 907–918.
https://doi.org/10.1042/EBC20200004
Published: 07 December 2020
View article titled, An emerging role of chromatin-interacting RNA-binding proteins in transcription regulation
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Includes: Supplementary data
Articles

Detection methods of epitranscriptomic mark N 6 -methyladenosine

Ye Wang, Guifang Jia
Journal: Essays in Biochemistry
Essays Biochem (2020) 64 (6): 967–979.
https://doi.org/10.1042/EBC20200039
Published: 07 December 2020
View article titled, Detection methods of epitranscriptomic mark N 6 -methyladenosine
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Articles

Kinetochore–microtubule coupling mechanisms mediated by the Ska1 complex and Cdt1

Amit Rahi, Manas Chakraborty, Kristen Vosberg, Dileep Varma
Journal: Essays in Biochemistry
Essays Biochem (2020) 64 (2): 337–347.
https://doi.org/10.1042/EBC20190075
Published: 26 August 2020
View article titled, Kinetochore–microtubule coupling mechanisms mediated by the Ska1 complex and Cdt1
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Articles

Phosphatidic acid: an emerging versatile class of cellular mediators

Sang-Chul Kim, Xuemin Wang
Journal: Essays in Biochemistry
Essays Biochem (2020) 64 (3): 533–546.
https://doi.org/10.1042/EBC20190089
Published: 09 July 2020
View article titled, Phosphatidic acid: an emerging versatile class of cellular mediators
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Articles

Persulfides, at the crossroads between hydrogen sulfide and thiols

Dayana Benchoam, Ernesto Cuevasanta, Matías N. Möller, Beatriz Alvarez
Journal: Essays in Biochemistry
Essays Biochem (2020) 64 (1): 155–168.
https://doi.org/10.1042/EBC20190049
Published: 04 February 2020
View article titled, Persulfides, at the crossroads between hydrogen sulfide and thiols
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Articles

Common modifications of selenocysteine in selenoproteins

Elias S.J. Arnér
Journal: Essays in Biochemistry
Essays Biochem (2020) 64 (1): 45–53.
https://doi.org/10.1042/EBC20190051
Published: 23 December 2019
View article titled, Common modifications of selenocysteine in selenoproteins
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Articles

DNA methylation analysis for screening and diagnostic testing in neurodevelopmental disorders

David E. Godler, David J. Amor
Journal: Essays in Biochemistry
Essays Biochem (2019) 63 (6): 785–795.
https://doi.org/10.1042/EBC20190056
Published: 07 November 2019
View article titled, DNA methylation analysis for screening and diagnostic testing in neurodevelopmental disorders
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Articles

Recombinant DNA technology and DNA sequencing

Mark A. J. Roberts
Journal: Essays in Biochemistry
Essays Biochem (2019) 63 (4): 457–468.
https://doi.org/10.1042/EBC20180039
Published: 11 October 2019
View article titled, Recombinant DNA technology and DNA sequencing
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Includes: Supplementary data
Articles

Basement membrane collagens and disease mechanisms

Anna Gatseva, Yuan Yan Sin, Gaia Brezzo, Tom Van Agtmael
Journal: Essays in Biochemistry
Essays Biochem (2019) 63 (3): 297–312.
https://doi.org/10.1042/EBC20180071
Published: 06 August 2019
View article titled, Basement membrane collagens and disease mechanisms
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Articles

Collagen-binding proteins: insights from the Collagen Toolkits

Richard W. Farndale
Journal: Essays in Biochemistry
Essays Biochem (2019) 63 (3): 337–348.
https://doi.org/10.1042/EBC20180070
Published: 02 July 2019
View article titled, Collagen-binding proteins: insights from the Collagen Toolkits
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Articles

Using genetically incorporated unnatural amino acids to control protein functions in mammalian cells

Alexander R. Nödling, Luke A. Spear, Thomas L. Williams, Louis Y.P. Luk, Yu-Hsuan Tsai
Journal: Essays in Biochemistry
Essays Biochem (2019) 63 (2): 237–266.
https://doi.org/10.1042/EBC20180042
Published: 15 May 2019
View article titled, Using genetically incorporated unnatural amino acids to control protein functions in mammalian cells
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Articles

TAPping into the treasures of tubulin using novel protein production methods

Nuo Yu, Niels Galjart
Journal: Essays in Biochemistry
Essays Biochem (2018) 62 (6): 781–792.
https://doi.org/10.1042/EBC20180033
Published: 14 November 2018
View article titled, TAPping into the treasures of tubulin using novel protein production methods
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Articles

Systems biology: old news or new stimulus for biochemistry

Walter Kolch, Dirk Fey, Colm J. Ryan
Journal: Essays in Biochemistry
Essays Biochem (2018) 62 (4): 483–486.
https://doi.org/10.1042/EBC20180002
Published: 26 October 2018
View article titled, Systems biology: old news or new stimulus for biochemistry
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Articles

Enzymatic complexes across scales

Panagiotis L. Kastritis, Anne-Claude Gavin
Journal: Essays in Biochemistry
Essays Biochem (2018) 62 (4): 501–514.
https://doi.org/10.1042/EBC20180008
Published: 12 October 2018
View article titled, Enzymatic complexes across scales
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Articles

Measuring microtubule dynamics

Alexander James Zwetsloot, Gokhan Tut, Anne Straube
Journal: Essays in Biochemistry
Essays Biochem (2018) 62 (6): 725–735.
https://doi.org/10.1042/EBC20180035
Published: 04 October 2018
View article titled, Measuring microtubule dynamics
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Articles

Long-range proton-coupled electron transfer in the Escherichia coli class Ia ribonucleotide reductase

Steven Y. Reece, Mohammad R. Seyedsayamdost
Journal: Essays in Biochemistry
Essays Biochem (2017) 61 (2): 281–292.
https://doi.org/10.1042/EBC20160072
Published: 09 May 2017
View article titled, Long-range proton-coupled electron transfer in the Escherichia coli class Ia ribonucleotide reductase
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Articles

The zinc paradigm for metalloneurochemistry

Chelsea A. Barr, Shawn C. Burdette
Journal: Essays in Biochemistry
Essays Biochem (2017) 61 (2): 225–235.
https://doi.org/10.1042/EBC20160073
Published: 09 May 2017
View article titled, The zinc paradigm for metalloneurochemistry
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