Forty years ago, archaea were described as a separate domain of life, distinct from bacteria and eukarya. Although it is known for quite a long time that methanogenic archaea are substantial components of the human gastrointestinal tract (GIT) and the oral cavity, the knowledge on the human archaeome is very limited. Various methodological problems contribute to the invisibility of the human archaeome, resulting in severe knowledge gaps and contradictory information. Similar to the bacteriome, the archaeal biogeography was found to be site-specific, forming (i) the thaumarchaeal skin landscape, (ii) the (methano)euryarchaeal GIT landscape, (iii) a mixed skin/GIT landscape in nose, and (iv) a woesearchaeal lung landscape, including numerous unknown archaeal clades. Compared with so-called universal microbiome approaches, archaea-specific protocols reveal a wide diversity and high quantity of archaeal signatures in various human tissues, with up to 1 : 1 ratios of bacteria and archaea in appendix and nose samples. The archaeome interacts closely with the bacteriome and the human body cells, whereas the roles of the human-associated archaea with respect to human health are only sparsely described. Methanogenic archaea and methane production were correlated with many health issues, including constipation, periodontitis and multiple sclerosis. However, one of the most burning questions — do archaeal pathogens exist? — still remains obscure to date.
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Cover Image
Cover Image
In the cover image, which depicts archaeal cell division, fl uorescence microscopy shows FtsZ1-GFP localisation in pleomorphic cells of Haloferax volcanii. This archaeal model organism was originally isolated from the Dead Sea, but is well suited to live-cell studies owing to its relatively large, flat cells that show distinct differentiation. Multiple proteins from the tubulin superfamily control cell division and cell shape in this species (see article by Liao et al in this issue; pages 547–559). Archaea are expected to provide important insights into cellular evolution and fundamental cell structures such as the cytoskeleton. Image kindly provided by Iain Duggin (The ithree institute, University of Technology Sydney).
The human archaeome: methodological pitfalls and knowledge gaps
Nicholas P. Robinson, Alexander Mahnert, Marcus Blohs, Manuela-Raluca Pausan, Christine Moissl-Eichinger; The human archaeome: methodological pitfalls and knowledge gaps. Emerg Top Life Sci 14 December 2018; 2 (4): 469–482. doi: https://doi.org/10.1042/ETLS20180037
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