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Keywords: genome size
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Biosci Rep (2021) 41 (7): BSR20210824.
Published: 20 July 2021
... motifs. The genome size was predicted to be ∼883.8 Mb by K-mer analysis (K = 25), and the heterozygosity and repeat ratio were 0.289 and 39.03%, respectively. The genome sequences were assembled into 571624 contigs, covering a total length of ∼819.3 Mb with an N50 of 2867 bp. A total of 2217422 simple...
Includes: Supplementary data
Biosci Rep (2021) 41 (3): BSR20203868.
Published: 10 March 2021
..., simple sequence repeat (SSR) loci were identified for microsatellite marker development. The predicted genome size was ∼867 Mb using K-mer (a sequence of k characters in a string) analysis (K = 17), and heterozygosity and duplication rates were 0.655 and 0.809%, respectively. A total of 421467 SSRs were...
Biosci Rep (2020) 40 (11): BSR20201295.
Published: 13 November 2020
... the genome characters of A. ommaturus. A total of 50.50 G high-quality sequence data were obtained in the present study. From the 19-mer distribution frequency, the estimated genome size was 928.01 Mb. The calculated sequence repeat rate was about 38.31%, the heterozygosity was approximately 0.17...
Biosci Rep (2020) 40 (10): BSR20202709.
Published: 28 October 2020
... pharmacological value, genomic information regarding A. lancea is currently unavailable. In the present study, the whole genome sequence of A. lancea was obtained using an Illumina sequencing platform. The results revealed an estimated genome size for A. lancea of 4,159.24 Mb, with 2.28% heterozygosity...
Includes: Supplementary data
Biosci Rep (2020) 40 (6): BSR20201101.
Published: 26 June 2020
... and developed novel genomic-SSR markers of Z. bungeanum . Clean data (∼197.16 Gb) were obtained and assembled into 11185221 scaffolds with an N50 of 183 bp. K -mer analysis revealed that Z. bungeanum has an estimated genome size of 3971.92 Mb, and the GC content, heterozygous rate, and repeat sequence rate...
Includes: Supplementary data
Biosci Rep (2020) 40 (2): BSR20192252.
Published: 24 February 2020
... a whole genome survey dataset to provide fundamental information of its genome and develop genome-wide microsatellite markers for S. marmoratus . The genome size of S. marmoratus was estimated as approximate 800 Mb by using K-mer analyses, and its heterozygosity ratio and repeat sequence ratio were 0.17...
Includes: Supplementary data