... cavity surface of the chaperonin GroEL. 1 email mariusc@mail.nih.gov 20 9 2013 © The Authors Journal compilation © 2013 Biochemical Society 2013 conformational selection encounter complex induced fit macromolecular assembly protein–DNA interaction sparsely populated state...

..., in some cases with submolecular resolution. In the present review, we discuss a few of the most important recent developments in this field and how they might be applied to studying protein–protein and protein–DNA interactions or in the context of ultra-fast DNA sequencing. In addition, biological...

... repair nucleosome positioning nucleosome structure protein–DNA interaction © The Authors Journal compilation © 2012 Biochemical Society 2012 13 1 2012 1 To whom correspondence should be addressed (email r.bowater@uea.ac.uk ). The nucleus is replete with abundant...

... be addressed (email PRice@uchicago.edu ). 2 9 2009 © The Authors Journal compilation © 2010 Biochemical Society 2010 crossover site DNA-bending protein protein–DNA interaction recombination serine recombinase synaptosome Site-specific recombinases rearrange DNA by cutting...

... protein–DNA interaction protein–protein interaction serine recombinase After infection of a sensitive host cell, temperate bacteriophages ‘make a decision’ between lytic growth and lysogeny, a latent state in which phage lytic genes are repressed and the phage genome is often integrated...

..., the challenge to understand how the individual genes are regulated within the cell remains. Here, I provide an overview of current computational methods to investigate transcriptional regulation. I will first discuss how representing protein–DNA interactions as a network provides us with a conceptual framework...

... of ALEX to the study of protein–nucleic acid interactions. 7 4 2008 © The Authors Journal compilation © 2008 Biochemical Society 2008 alternating-laser excitation (ALEX) biomolecular interaction fluorescence resonance energy transfer (FRET) protein–DNA interaction single-molecule...

... arginine repressor bacteria protein–DNA interaction thermophile transcription Abbreviations used: ArgR, arginine repressor; wHTH, winged helix-turn-helix. 310 Biochemical Society Transactions (2004) Volume 32, part 2 Arginine regulation in Thermotoga neapolitana and Thermotoga maritima D...