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Keywords: archaeon
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Articles
Biochem Soc Trans (2011) 39 (1): 111–115.
Published: 19 January 2011
...Richard P. Parker; Alison D. Walters; James P.J. Chong Methanococcus maripaludis S2 is a methanogenic archaeon with a well-developed genetic system. Its mesophilic nature offers a simple system in which to perform complementation using bacterial and eukaryotic genes. Although information-processing...
Articles
Biochem Soc Trans (2011) 39 (1): 145–149.
Published: 19 January 2011
... characterization of a novel DNA endonuclease that acts on branched DNA substrates. 1 To whom correspondence should be addressed (email hannu.myllykallio@polytechnique.edu ). 21 9 2010 © The Authors Journal compilation © 2011 Biochemical Society 2011 archaeon branched DNA...
Articles
Biochem Soc Trans (2011) 39 (1): 45–50.
Published: 19 January 2011
... (email fabian.blombach@gmail.com ). 22 7 2010 © The Authors Journal compilation © 2011 Biochemical Society 2011 archaeon GTPase ribosome assembly translation-factor-related GTPase (TRAFAC GTPase) The high number of ribosomal proteins that need to be incorporated...
Articles
Biochem Soc Trans (2011) 39 (1): 159–162.
Published: 19 January 2011
... knowledge about sRNAs and their function in the halophilic archaeon Haloferax volcanii . Using two different experimental approaches, 111 intergenic and 38 antisense sRNAs were identified, as well as 42 tRFs (tRNA-derived fragments). Observation of differential expression under various conditions suggests...
Articles
Biochem Soc Trans (2011) 39 (1): 163–168.
Published: 19 January 2011
... volcanii PLoS Genet. 2007 3 e77 7 Robinson N.P. Dionne I. Lundgren M. Marsh V.L. Bernander R. Bell S.D. Identification of two origins of replication in the single chromosome of the archaeon Sulfolobus solfataricus Cell 2004 116 25 38 8 Robinson N.P...
Articles
Biochem Soc Trans (2011) 39 (1): 99–103.
Published: 19 January 2011
... The Authors Journal compilation © 2011 Biochemical Society 2011 activator archaeon transcriptional regulation transcription factor B-recognition element (BRE) transcription factor B recruitment (TFB recruitment) upstream activator sequence (UAS) The archaeal transcriptional machinery...
Articles
Biochem Soc Trans (2011) 39 (1): 64–69.
Published: 19 January 2011
... 2011 archaeon flagellum motility type II secretion system type IV pilus assembly In general, prokaryotes possess a variety of cellular structures on their surface, e.g. flagella and pili, that are thought to be involved in survival under various environmental conditions. Most...
Articles
Biochem Soc Trans (2011) 39 (1): 104–106.
Published: 19 January 2011
... data, we propose a model of the catalytic cycle of primer synthesis by the pRN1 replication protein. 1 email georg.lipps@fhnw.ch 1 10 2010 © The Authors Journal compilation © 2011 Biochemical Society 2011 archaeon plasmid polymerase primase pRN1 The plasmid...
Articles
Biochem Soc Trans (2011) 39 (1): 20–24.
Published: 19 January 2011
... The Authors Journal compilation © 2011 Biochemical Society 2011 archaeon DNA interaction DNA sliding clamp proliferating-cell nuclear antigen (PCNA) proliferating-cell nuclear antigen-interacting protein box (PIP-box) replication factor C (RFC) PCNA (proliferating-cell nuclear antigen...
Articles
Biochem Soc Trans (2011) 39 (1): 70–76.
Published: 19 January 2011
... be addressed (email stephen.bell@path.ox.ac.uk ). 13 8 2010 © The Authors Journal compilation © 2011 Biochemical Society 2011 archaeon DNA replication ligase Okazaki fragment proliferating-cell nuclear antigen (PCNA) sliding clamp Three molecules of human FEN-1 have also been...
Articles
Articles
Biochem Soc Trans (2011) 39 (1): 169–173.
Published: 19 January 2011
... ). 16 8 2010 © The Authors Journal compilation © 2011 Biochemical Society 2011 archaeon endonuclease halophile homing endonuclease (HEN) intein HENs are a large and diverse class of selfish elements found in archaea, bacteria and lower eukaryotes, and their respective viruses...
Articles
Biochem Soc Trans (2011) 39 (1): 94–98.
Published: 19 January 2011
... © The Authors Journal compilation © 2011 Biochemical Society 2011 archaeon chaperonin heat shock molecular chaperone protein folding thermosome Figure 1 Top and side views of closed and open conformations of a lidless version of the M. maripaludis thermosome, based on single...
Articles
Biochem Soc Trans (2009) 37 (3): 547–551.
Published: 20 May 2009
... 2009 archaeon Fanconi's anaemia complementation group J (FancJ) helicase iron–sulfur-cluster-binding domain molecular evolution xeroderma pigmentosum complementation group D (XPD) The XPD/Rad3 helicase family comprises a group of related superfamily 2 DNA helicases with a 5′→3...
Articles
Articles
Biochem Soc Trans (2009) 37 (1): 7–11.
Published: 20 January 2009
... of signals between the N-terminal and C-terminal portions of the MCM protein [ 13 ]. Only low-resolution electron micrograph reconstruction studies have been performed on the full-length MCM protein from the archaeon M. thermautotrophicus . These studies suggest that the protein can adopt multiple forms...
Articles
Biochem Soc Trans (2009) 37 (1): 74–78.
Published: 20 January 2009
... molecular biology of Hel308, drawing together ideas of how it may contribute to genome stability through the control of recombination, with reference to paradigms developed in bacteria. archaeon Hel308 helicase recombination repair replication Since many stages of replication, repair...
Articles
Biochem Soc Trans (2009) 37 (1): 102–107.
Published: 20 January 2009
... ). 4 8 2008 © The Authors Journal compilation © 2009 Biochemical Society 2009 archaeon homologous recombination RadA RadB Rad51 RecA Recombinases are enzymes that are essential for HR (homologous recombination), since they catalyse homologous base-pairing and strand exchange...
Articles
Biochem Soc Trans (2009) 37 (1): 133–136.
Published: 20 January 2009
... for the presence of sRNAs in the model archaeon Haloferax volcanii , resulting in more than 150 putative sRNA genes being identified. Northern blot analyses were used to study (differential) expression of sRNA genes. Several chromosomal deletion mutants of sRNA genes were generated and compared with the wild-type...
Articles
Biochem Soc Trans (2009) 37 (1): 46–51.
Published: 20 January 2009
.... Our studies on the type II chaperonins of the genetically tractable archaeon Haloferax volcanii have shown that only one of the three genes has to be present for the organisms to grow, but that there is some evidence for functional specialization between the different chaperonin proteins. All archaea...
Articles
Biochem Soc Trans (2009) 37 (1): 12–17.
Published: 20 January 2009
... the molecular mechanisms of transcription. 1 To whom correspondence should be addressed (email werner@biochem.ucl.ac.uk ). archaeon evolution RNA polymerase transcription The structure and function of RNAP ancestors in the deep and distant past of the ‘RNA world’ is subject to much...
Articles
Biochem Soc Trans (2009) 37 (1): 52–57.
Published: 20 January 2009
... of a GTP-binding protein from the hyperthermophilic archaeon Sulfolobus solfataricus Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun. 2007 63 239 241 46 Sabina J. Söll D. The RNA-binding PUA domain of archaeal tRNA-guanine transglycosylase is not required for archaeosine...
Articles
Biochem Soc Trans (2009) 37 (1): 83–87.
Published: 20 January 2009
..., polyadenylation and nuclease activities in the human exosome and associated factors have been separated. 1 To whom correspondence should be addressed (email hopfner@lmb.uni-muenchen.de ). 10 10 2008 © The Authors Journal compilation © 2009 Biochemical Society 2009 archaeon exonuclease...
Articles
Biochem Soc Trans (2009) 37 (1): 18–22.
Published: 20 January 2009
... RNA polymerases analyzed by immunological comparison of their components EMBO J. 1983 2 751 755 18 Hethke C. Geerling A.C.M. Hausner W. de Vos W. Thomm M. A cell-free transcription system for the hyperthermophilic archaeon Pyrococcus furiosus Nucleic Acids Res...
Articles
Biochem Soc Trans (2009) 37 (1): 114–117.
Published: 20 January 2009
.... Walther J. McInnerney K. Brouns S.J.J. van de Werken H.J.G. Bothner B. Douglas T. van der Oost J. Young M.J. Transcriptome analysis of infection of the archaeon Sulfolobus solfataricus with Sulfolobus turreted icosahedral virus J. Virol. 2008 82 4874 4883 3...
Articles
Biochem Soc Trans (2009) 37 (1): 88–91.
Published: 20 January 2009
.... 1 email grogandw@email.uc.edu 29 7 2008 © The Authors Journal compilation © 2009 Biochemical Society 2009 archaeon conjugation electroporation homologous recombination oligonucleotide Sulfolobus acidocaldarius Micro-organisms offer practical advantages...
Articles
Biochem Soc Trans (2009) 37 (1): 151–155.
Published: 20 January 2009
.... This archaeal Vps4–ESCRT-III interaction appears to have a fundamental role in cell division in the Crenarchaea. 1 To whom correspondence should be addressed (email rlw@mrc-lmb.cam.ac.uk ). 17 11 2008 © The Authors Journal compilation © 2009 Biochemical Society 2009 archaeon...
Articles
Biochem Soc Trans (2009) 37 (1): 65–68.
Published: 20 January 2009
... of uracil and suggests how this is coupled to cessation of polymerization. The possible role of read-ahead recognition of uracil/hypoxanthine in DNA repair is discussed, as is the observation that the feature appears to be limited to replicative polymerases of the archaeal domain. archaeon DNA...
Articles
Biochem Soc Trans (2009) 37 (1): 92–96.
Published: 20 January 2009
... archaeon gene knockout hyperthermophile marker gene plasmid Sulfolobus islandicus Sulfolobus is a genus of hyperthermophilic acidophiles that thrives in terrestrial acidic hot springs worldwide. These organisms are aerobic heterotrophs, growing optimally in a relatively simple medium at 75...
Articles
Biochem Soc Trans (2009) 37 (1): 123–126.
Published: 20 January 2009
.... Microbiol. 2005 7 789 797 32 Han C.J. Park S.H. Kelly R.M. Acquired thermotolerance and stressed-phase growth of the extremely thermoacidophilic archaeon Metallosphaera sedula in continuous culture Appl. Environ. Microbiol. 1997 63 2391 2396 33 Peeples T.L. Kelly...
Articles
Biochem Soc Trans (2009) 37 (1): 1–6.
Published: 20 January 2009
..., revealing that the MCM complex has ATPase, DNA-binding and -unwinding activities. Unusually, the genome of the methanogenic archaeon Methanococcus maripaludis contains four MCM homologues, all of which contain the conserved motifs required for function. The availability of a wide range of genetic tools...
Articles
Biochem Soc Trans (2009) 37 (1): 97–101.
Published: 20 January 2009
... ). 30 7 2008 © The Authors Journal compilation © 2009 Biochemical Society 2009 archaeon deletion mutant genetics plasmid recombination Sulfolobus Manipulation of the genetic information of organisms is a vital tool to investigate the role and function of genes. In model...
Articles
Biochem Soc Trans (2009) 37 (1): 69–73.
Published: 20 January 2009
... M. Ciaramella M. Functional interaction of reverse gyrase with single-strand binding protein of the archaeon Sulfolobus Nucleic Acids Res. 2005 33 564 576 27 Napoli A. Valenti A. Salerno V. Nadal M. Garnier F. Rossi M. Ciaramella M. Reverse gyrase...
Articles
Biochem Soc Trans (2009) 37 (1): 36–41.
Published: 20 January 2009
... 10 2008 © The Authors Journal compilation © 2009 Biochemical Society 2009 aggregation archaeon DNA repair hyperthermophile Sulfolobus UV damage All living organisms, from bacteria to archaea and eukaryotes, have an impressive number of proteins and pathways that seem...
Articles
Biochem Soc Trans (2006) 34 (1): 115–117.
Published: 20 January 2006
... by a further approx. 30%. 1 To whom correspondence should be addressed (email mjbonete@ua.es ). 19 9 2005 © 2006 The Biochemical Society 2006 archaeon denitrification halophile Haloferax mediterranei respiratory nitrate pathway transcription Bacterial nitrate...