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Keywords: X-ray crystallography
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Articles
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2016) 44 (4): 1177–1182.
Published: 15 August 2016
... machineries of Pol I and Pol III [ 6 ]. cryo-electron microscopy eukaryotic RNA polymerase complex integrated structural biology multiprotein assembly X-ray crystallography © 2016 The Author(s). published by Portland Press Limited on behalf of the Biochemical Society 2016 29 3 2016...
Articles
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2013) 41 (5): 1260–1264.
Published: 23 September 2013
... correspondence should be addressed (email a.r.pearson@leeds.ac.uk ). 26 6 2013 © 2013 The Authors 2013 laser spectroscopy synchrotron time-resolved spectroscopy X-ray crystallography To fully understand a biochemical process, it is necessary to observe not only the resting state...
Articles
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2013) 41 (5): 1265–1271.
Published: 23 September 2013
... © 2013 The Authors 2013 bioenergetics complex I membrane protein structure NADH:ubiquinone oxidoreductase respiratory chain X-ray crystallography Complex I (NADH:ubiquinone oxidoreductase, EC 1.6.5.3) plays a central role in the respiratory chain in mitochondria and many bacteria...
Articles
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2013) 41 (4): 1008–1016.
Published: 18 July 2013
... and regulation. 1 To whom correspondence should be addressed (email jane.endicott@ncl.ac.uk ). 3 6 2013 © The Authors Journal compilation © 2013 Biochemical Society 2013 cell cycle cyclin cyclin-dependent kinase (CDK) phosphorylation transcription X-ray crystallography...
Articles
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2012) 40 (3): 531–538.
Published: 22 May 2012
... can be monitored by combining X-ray crystallography, in crystallo optical spectroscopy and simulation tools such as quantum chemistry/molecular mechanics hybrid approaches. Besides their usefulness to rationally engineer better performing fluorescent proteins for nanoscopy and other biotechnological...
Articles
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2012) 40 (2): 351–356.
Published: 21 March 2012
... and rationale during the discovery process. 1 email sxt30@psu.edu 6 9 2011 © The Authors Journal compilation © 2012 Biochemical Society 2012 chromatin histone acetyltransferase (HAT) molecular recognition nucleosome X-ray crystallography If DNA is the blueprint of life...
Articles
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2011) 39 (5): 1313–1322.
Published: 21 September 2011
...@ysbl.york.ac.uk 23 4 2011 © The Authors Journal compilation © 2011 Biochemical Society 2011 Chinese biochemistry Chinese–U.K. research collaboration insulin U.K. biochemistry X-ray crystallography Figure 7 Dorothy Hodgkin and Fred Sanger, Cambridge, 1984, at the 50th anniversary...
Articles
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2011) 39 (5): 1323–1326.
Published: 21 September 2011
... biochemistry Chinese–U.K. research collaboration insulin U.K. biochemistry X-ray crystallography On the occasion of the Centenary of the founding of Biochemical Society, the Joint Sino–U.K. Protein Symposium was held in Shanghai in May 2011. In the present article, I focus on insulin research...
Articles
Richard J. Cogdell, Alastair T. Gardiner, Aleksander W. Roszak, Sigitas Stončius, Pavel Kočovský, Neil W. Isaacs
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2011) 39 (3): 775–779.
Published: 20 May 2011
... photosynthetic bacterium X-ray crystallography Figure 4 The Br-LDAO-binding site at the surface of RC from Blc. viridis The 2 F o − F c electron density at 1.0σ level (blue) and F o − F c electron density at 3.0σ level (green) as found in the initial maps calculated for the 1.85 Å (1 Å=0.1 nm...
Articles
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2009) 37 (2): 378–381.
Published: 20 March 2009
...Arwen R. Pearson; Robin L. Owen The combination of X-ray crystallography and rapid cryo-trapping methods has enabled the visualization of catalytic intermediates in a variety of enzyme systems. However, the resolution of the X-ray experiment is not always sufficient to precisely place the structure...
Articles
Jonathan A.R. Worrall, Ben F. Luisi, Beatrix G. Schlarb-Ridley, Derek S. Bendall, Christopher J. Howe
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2008) 36 (6): 1175–1179.
Published: 19 November 2008
... salient difference between the haem pockets is that a valine residue in cytochrome c 6A replaces a highly conserved glutamine residue in cytochrome c 6 . This difference has been probed using site-directed mutagenesis, X-ray crystallography and protein film voltammetry studies. It has been found...
Articles
Bostjan Kobe, Gregor Guncar, Rebecca Buchholz, Thomas Huber, Bohumil Maco, Nathan Cowieson, Jennifer L. Martin, Mary Marfori, Jade K. Forwood
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2008) 36 (6): 1438–1441.
Published: 19 November 2008
... (macromolecular X-ray crystallography) is the most popular method to obtain high-resolution structural information on protein–protein complexes, and it yields the most detailed structural information about the interaction. However, there is a major issue when using MX to study protein–protein interactions...
Articles
C. Roy D. Lancaster, Elena Herzog, Hanno D. Juhnke, M. Gregor Madej, Florian G. Müller, Rajsekhar Paul, Philipp G. Schleidt
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2008) 36 (5): 996–1000.
Published: 19 September 2008
... atomic model fumarate reductase membrane protein succinate dehydrogenase transmembrane electrochemical proton potential X-ray crystallography This electrogenic catalysis indeed appeared to be the case for some dihaem-containing representatives of the superfamily of QFRs and SQRs...
Articles
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2008) 36 (4): 567–574.
Published: 22 July 2008
... codon–anticodon pairing decoding ribosome RNA X-ray crystallography Ribosomes are large macromolecular assemblies consisting of approx. two-thirds by mass of RNA, with the rest being proteins. Given their molecular mass of approx. 2.5 MDa in bacteria, it was not clear whether it would ever...
Articles
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2008) 36 (2): 181–187.
Published: 20 March 2008
... cadherin molecules interacting at their N-terminal tips. An integrative structural approach involving X-ray crystallography, cryo-electron tomography and immuno-electron microscopy should give the complete picture of the architecture of this important junction; identifying its various proteins and showing...
Articles
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2008) 36 (1): 27–32.
Published: 22 January 2008
... simulation coarse-grained simulation high-throughput computational approach membrane protein Molecular Dynamics X-ray crystallography Membrane proteins are of considerable biomedical importance, accounting for approx. 25% of genes [ 1 ] and forming a major class of drug targets. Although...
Articles
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2006) 34 (6): 1058–1061.
Published: 25 October 2006
... in the Pol III modelling because of weak or apparently lacking sequence conservation with its Pol III counterpart C17/25. We therefore determined the C17/25 structure by X-ray crystallography. The structure of C25 resembles that of its counterparts Rpb7 and RpoE. The structure of C17 reveals a compact N...
Articles
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2005) 33 (5): 924–930.
Published: 26 October 2005
... the membrane lipids. X-ray crystallography has provided high-resolution structures for PS-I and the purple bacterial reaction centre, and revealed binding sites for a number of lipids, either embedded in the protein interior or attached to the protein surface. These lipids play a variety of roles, including...
Articles
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2004) 32 (5): 647–654.
Published: 26 October 2004
... 2004 The Biochemical Society 2004 deoxy sugar NADH rhamnose X-ray crystallography The structures identify that a single, absolutely conserved histidine residue is positioned below the plane of the ring, and is in the correct location to abstract a proton from C3′ or C5′. This histidine...
Articles
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2004) 32 (5): 761–763.
Published: 26 October 2004
... dynamics X-ray crystallography All X-ray techniques are based on the averaged measurements of many molecules or atoms. Thus the behaviours of individual single protein molecules cannot be determined using X-rays. In this work, we demonstrated the direct observations of the rotating motions...
Articles
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2003) 31 (5): 973–979.
Published: 01 October 2003
...R.A. Palmer; H. Niwa X-ray crystallography enables details of covalent and non-covalent interactions to be analysed quantitatively in three dimensions, thus providing the basis for the understanding of binding of ligands to proteins as well as modes of action such as cell-surface binding...
Articles
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2003) 31 (4): 791–794.
Published: 01 August 2003
... ligands. They also lack any apparent enzymic activity. Concurrent with the rapid increase in available genomic sequence data in recent years, it has become apparent that the LTP/LPS-binding proteins are part of a much larger family Key words: BPI, homology modelling, X-ray crystallography. Abbreviations...
Articles
C. Dong, K. Beis, M.-F. Giraud, W. Blankenfeldt, S. Allard, L.L. Major, I.D. Kerr, C. Whitfield, J.H. Naismith
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2003) 31 (3): 532–536.
Published: 01 June 2003
...). Of the amino acids, only glycine, serine and cysteine have a similar ratio. Further, each position is often asymmetric, adding further diversity. In organic chemical terms this has meant that the Key words: enzyme structure, sugar, X-ray crystallography. Abbreviation used: LBHB, low-barrier hydrogen bond...
Articles
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2003) 31 (3): 634–636.
Published: 01 June 2003
... Focused Meeting held at AstraZeneca R&D Charnwood, Loughborough, 24–25 February 2003 11 February 2003 © 2003 Biochemical Society 2003 computational docking study conotoxin molecular topology X-ray crystallography Abbreviations used: ACh, acetylcholine; nAChR...
Articles
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2003) 31 (3): 493–496.
Published: 01 June 2003
... plasma. Recently the CuAO located in adipocyte membranes has been linked to glucose transport via the GLUT-4 pathway [5 10]. Key words: catalytic intermediate, copper-containing amine oxidase, oxygen activation, quinoprotein, X-ray crystallography. Abbreviations used: CuAO, copper-containing amine...
Articles
C.M.C. Lobley, F. Schmitzberger, M.L. Kilkenny, H. Whitney, H.H. Ottenhof, E. Chakauya, M.E. Webb, L.M. Birch, K.L. Tuck, C. Abell, A.G. Smith, T.L. Blundell
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2003) 31 (3): 563–571.
Published: 01 June 2003
... University, 12–14 January 2003 16 December 2002 © 2003 Biochemical Society 2003 enzyme pathway evolution pantothenate X-ray crystallography Abbreviations used: KPHMT, ketopantoate hydroxymethyltransferase; KPR, ketopantoate reductase; ADC, aspartate decarboxylase; PS...
Articles
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2003) 31 (3): 620–624.
Published: 01 June 2003
... metabolism, cocaine, heroin, human carboxylesterase 1 inhibitor, X-ray crystallography. Abbreviations used: hCE1, human carboxylesterase 1; CEH, cholesteryl ester hydrolase; ACAT, acyl-CoA:cholesterol acyltransferase; ER, endoplasmic reticulum; CRP, C-reactive protein; rCE, rabbit carboxylesterase; AcChE...
Articles
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2003) 31 (3): 553–557.
Published: 01 June 2003
... is activated up to 200-fold by the binding of NO to the haem, whereas the binding of CO gives rise to only a mild stimulation of activity. Through X-ray crystallography we have studied NO and CO binding to cyt c ´. CO binds to the distal face to give a 6-coordinate (6c) adduct. By contrast, NO binding gives...
Articles
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2003) 31 (3): 528–531.
Published: 01 June 2003
..., cholesterol-lowering, enzyme inhibition, isothermal titration calori- metry, statin, X-ray crystallography. Abbreviations used: E.I, enzyme inhibitor complex; E.I , second E.I complex in a two- step mechanism; HMG-CoA, 3-hydroxy-3-methylglutaryl-CoA; HMG-CoAR, HMG-CoA reductase; K i , inhibition constant...
Articles
S.J. Firbank, M. Rogers, R. Hurtado-Guerrero, D.M. Dooley, M.A. Halcrow, S.E.V. Phillips, P.F. Knowles, M.J. McPherson
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2003) 31 (3): 506–509.
Published: 01 June 2003
... – A Structural Perspective, a Biochemical Society Focused Meeting held at St. Andrews University, 12–14 January 2003 6 January 2003 © 2003 Biochemical Society 2003 cofactor biogenesis copper galactose oxidase post-translational processing X-ray crystallography Abbreviations...
Articles
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2002) 30 (6): 990–996.
Published: 01 November 2002
...-mail Paul.Barlowa@ac.uk ) 18 6 2002 © 2002 Biochemical Society 2002 complement module multiple domain NMR X-ray crystallography CCP, complement control protein module CR, complement receptor: HSQC, heteronuclear single-quantum coherence: LHR, long homologous repeat: MCP, membrane...
Articles
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2002) 30 (6): 1162–1166.
Published: 01 November 2002
... through in vitro selection extended the repertoire of RNA catalysis. Two directions of current and future interest are the determination of atomic-resolution structures of large ribozymes by X-ray crystallography and the structural and mechanistic analysis of complexes of ribozymes with protein...
Articles
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2002) 30 (4): 771–774.
Published: 01 August 2002
... solution X-ray scattering X-ray crystallography Fur, ferric-uptake regulatory protein HTH, helix-tum-helix Biometals 2002: Third International Biometals Symposium: Focused Meeting Organized by S. Andrews (School of Animal and Microbial Sciences, University of Reading), R. Cammack, R. W...
Articles
P. M. Shoolingin-Jordan, P. Spencer, M. Sarwar, P. E. Erskine, K.-M. Cheung, J. B. Cooper, E. B. Norton
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2002) 30 (4): 584–590.
Published: 01 August 2002
... in the recovery of substantial enzyme activity. The effects of the site-directed alkylating inhibitor, 5-chlorolaevulinic acid, and 4,7-dioxosebacic acid, a putative intermediate analogue, were investigated by X-ray crystallography. These inhibitors reacted with both active-site lysine residues. The role...
Articles
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2001) 29 (4): 377–384.
Published: 01 August 2001
... correspondence should be addressed (e-mail mlemmon@mail.med.upenn.edu ) 16 3 2001 © 2001 Biochemical Society 2001 PH domains phosphoinositide-binding sites phosphoinositide 3-kinase X-ray crystallography Btk, Bruton's tyrosine kinase DAPPI, d ual a daptor for p hosphotyrosine...
Articles
Journal:
Biochemical Society Transactions
Biochem Soc Trans (2001) 29 (2): 91–99.
Published: 01 May 2001
... evidence. 1 E-mail gajhede@psg.ki.ku.dk 21 12 2000 © 2001 Biochemical Society 2001 structure X-ray crystallography BHA, benzhydroxamic acid HRP C, horseradish peroxidase C FA, ferulic acid CCP, cytochrome c peroxidase ARP, Arthromyces ramosus peroxidase n 0...