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Articles

Applications of artificial intelligence and machine learning in dynamic pathway engineering

Charlotte Merzbacher, Diego A. Oyarzún
Journal: Biochemical Society Transactions
Biochem Soc Trans (2023) BST20221542.
https://doi.org/10.1042/BST20221542
Published: 01 September 2023
View article titled, Applications of artificial intelligence and machine learning in dynamic pathway engineering
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Articles

Biomimetic engineering of nonribosomal peptide synthesis

Kexin Zhang, Hajo Kries
Journal: Biochemical Society Transactions
Biochem Soc Trans (2023) 51 (4): 1521–1532.
https://doi.org/10.1042/BST20221264
Published: 06 July 2023
View article titled, Biomimetic engineering of nonribosomal peptide synthesis
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Articles

Recent developments in the engineering of Rubisco activase for enhanced crop yield

Ignacio Sparrow-Muñoz, Timothy C. Chen, Steven J. Burgess
Journal: Biochemical Society Transactions
Biochem Soc Trans (2023) 51 (2): 627–637.
https://doi.org/10.1042/BST20221281
Published: 17 March 2023
View article titled, Recent developments in the engineering of Rubisco activase for enhanced crop yield
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Articles

The role of sensory kinase proteins in two-component signal transduction

Adrián F. Alvarez, Dimitris Georgellis
Journal: Biochemical Society Transactions
Biochem Soc Trans (2022) 50 (6): 1859–1873.
https://doi.org/10.1042/BST20220848
Published: 18 November 2022
View article titled, The role of sensory kinase proteins in two-component signal transduction
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Articles

Frankenstein Cas9: engineering improved gene editing systems

Pascal D. Vos, Aleksandra Filipovska, Oliver Rackham
Journal: Biochemical Society Transactions
Biochem Soc Trans (2022) 50 (5): 1505–1516.
https://doi.org/10.1042/BST20220873
Published: 28 October 2022
View article titled, Frankenstein Cas9: engineering improved gene editing systems
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Articles

The functional importance of VCP to maintaining cellular protein homeostasis

Brittany A. Ahlstedt, Rakesh Ganji, Malavika Raman
Journal: Biochemical Society Transactions
Biochem Soc Trans (2022) 50 (5): 1457–1469.
https://doi.org/10.1042/BST20220648
Published: 05 October 2022
View article titled, The functional importance of VCP to maintaining cellular protein homeostasis
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Articles

Striving for sustainable biosynthesis: discovery, diversification, and production of antimicrobial drugs in Escherichia coli

Riccardo Iacovelli, Nika Sokolova, Kristina Haslinger
Journal: Biochemical Society Transactions
Biochem Soc Trans (2022) 50 (5): 1315–1328.
https://doi.org/10.1042/BST20220218
Published: 05 October 2022
View article titled, Striving for sustainable biosynthesis: discovery, diversification, and production of antimicrobial drugs in Escherichia coli
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Articles

Studying actin-induced cell shape changes using Giant Unilamellar Vesicles and reconstituted actin networks

Rogério Lopes dos Santos, Clément Campillo
Journal: Biochemical Society Transactions
Biochem Soc Trans (2022) 50 (5): 1527–1539.
https://doi.org/10.1042/BST20220900
Published: 16 September 2022
View article titled, Studying actin-induced cell shape changes using Giant Unilamellar Vesicles and reconstituted actin networks
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Articles

Microbial pathways for advanced biofuel production

John Love
Journal: Biochemical Society Transactions
Biochem Soc Trans (2022) 50 (2): 987–1001.
https://doi.org/10.1042/BST20210764
Published: 11 April 2022
View article titled, Microbial pathways for advanced biofuel production
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Articles

Engineering E. coli to synthesize butanol

Ali Samy Abdelaal, Syed Shams Yazdani
Journal: Biochemical Society Transactions
Biochem Soc Trans (2022) 50 (2): 867–876.
https://doi.org/10.1042/BST20211009
Published: 31 March 2022
View article titled, Engineering E. coli to synthesize butanol
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Articles

Directed evolution approaches for optogenetic tool development

Jaewan Jang, G. Andrew Woolley
Journal: Biochemical Society Transactions
Biochem Soc Trans (2021) 49 (6): 2737–2748.
https://doi.org/10.1042/BST20210700
Published: 16 November 2021
View article titled, Directed evolution approaches for optogenetic tool development
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Articles

Controlled metabolic cascades for protein synthesis in an artificial cell

Huong Thanh Nguyen, Sungwoo Lee, Kwanwoo Shin
Journal: Biochemical Society Transactions
Biochem Soc Trans (2021) 49 (5): 2143–2151.
https://doi.org/10.1042/BST20210175
Published: 08 October 2021
View article titled, Controlled metabolic cascades for protein synthesis in an artificial cell
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Articles

Prototyping of microbial chassis for the biomanufacturing of high-value chemical targets

Christopher J. Robinson, Jonathan Tellechea-Luzardo, Pablo Carbonell, Adrian J. Jervis, Cunyu Yan, Katherine A. Hollywood, Mark S. Dunstan, Andrew Currin, Eriko Takano, Nigel S. Scrutton
Journal: Biochemical Society Transactions
Biochem Soc Trans (2021) 49 (3): 1055–1063.
https://doi.org/10.1042/BST20200017
Published: 08 June 2021
View article titled, Prototyping of microbial chassis for the biomanufacturing of high-value chemical targets
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Articles

Chemical reporters to study mammalian O-glycosylation

Kathryn E. Huxley, Lianne I. Willems
Journal: Biochemical Society Transactions
Biochem Soc Trans (2021) 49 (2): 903–913.
https://doi.org/10.1042/BST20200839
Published: 16 April 2021
View article titled, Chemical reporters to study mammalian O-glycosylation
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Articles

Combinatorial biosynthesis for the generation of new-to-nature peptide antimicrobials

Fleur Ruijne, Oscar P. Kuipers
Journal: Biochemical Society Transactions
Biochem Soc Trans (2021) 49 (1): 203–215.
https://doi.org/10.1042/BST20200425
Published: 13 January 2021
View article titled, Combinatorial biosynthesis for the generation of new-to-nature peptide antimicrobials
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Articles

Biofilm and swarming emergent behaviours controlled through the aid of biophysical understanding and tools

Iago Grobas, Dario G. Bazzoli, Munehiro Asally
Journal: Biochemical Society Transactions
Biochem Soc Trans (2020) 48 (6): 2903–2913.
https://doi.org/10.1042/BST20200972
Published: 10 December 2020
View article titled, Biofilm and swarming emergent behaviours controlled through the aid of biophysical understanding and tools
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Articles

Fluorescent proteins for in vivo imaging, where's the biliverdin?

Felipe Montecinos-Franjola, John Y. Lin, Erik A. Rodriguez
Journal: Biochemical Society Transactions
Biochem Soc Trans (2020) 48 (6): 2657–2667.
https://doi.org/10.1042/BST20200444
Published: 16 November 2020
View article titled, Fluorescent proteins for in vivo imaging, where's the biliverdin?
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Articles

From protocells to prototissues: a materials chemistry approach

Pierangelo Gobbo
Journal: Biochemical Society Transactions
Biochem Soc Trans (2020) 48 (6): 2579–2589.
https://doi.org/10.1042/BST20200310
Published: 06 November 2020
View article titled, From protocells to prototissues: a materials chemistry approach
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Articles

Engineered protein switches for exogenous control of gene expression

Shaun Spisak, Marc Ostermeier
Journal: Biochemical Society Transactions
Biochem Soc Trans (2020) 48 (5): 2205–2212.
https://doi.org/10.1042/BST20200441
Published: 20 October 2020
View article titled, Engineered protein switches for exogenous control of gene expression
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Articles

Biosynthesis of lanthionine-constrained agonists of G protein-coupled receptors

Gert N. Moll, Anneke Kuipers, Rick Rink, Tjibbe Bosma, Louwe de Vries, Pawel Namsolleck
Journal: Biochemical Society Transactions
Biochem Soc Trans (2020) 48 (5): 2195–2203.
https://doi.org/10.1042/BST20200427
Published: 14 October 2020
View article titled, Biosynthesis of lanthionine-constrained agonists of G protein-coupled receptors
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Articles

CRISPR-based gene expression control for synthetic gene circuits

Javier Santos-Moreno, Yolanda Schaerli
Journal: Biochemical Society Transactions
Biochem Soc Trans (2020) 48 (5): 1979–1993.
https://doi.org/10.1042/BST20200020
Published: 23 September 2020
View article titled, CRISPR-based gene expression control for synthetic gene circuits
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Articles

To be more precise: the role of intracellular trafficking in development and pattern formation

Harrison M. York, Joanne Coyle, Senthil Arumugam
Journal: Biochemical Society Transactions
Biochem Soc Trans (2020) 48 (5): 2051–2066.
https://doi.org/10.1042/BST20200223
Published: 11 September 2020
View article titled, To be more precise: the role of intracellular trafficking in development and pattern formation
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Articles

In vitro reconstitution of autophagic processes

Jahangir Md. Alam, Nobuo N. Noda
Journal: Biochemical Society Transactions
Biochem Soc Trans (2020) 48 (5): 2003–2014.
https://doi.org/10.1042/BST20200130
Published: 08 September 2020
View article titled, In vitro reconstitution of autophagic processes
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Articles

Current problems and future avenues in proteoliposome research

Andrea Marco Amati, Simone Graf, Sabina Deutschmann, Nicolas Dolder, Christoph von Ballmoos
Journal: Biochemical Society Transactions
Biochem Soc Trans (2020) 48 (4): 1473–1492.
https://doi.org/10.1042/BST20190966
Published: 24 August 2020
View article titled, Current problems and future avenues in proteoliposome research
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Articles

Reinforcement learning in synthetic gene circuits

Adrian Racovita, Alfonso Jaramillo
Journal: Biochemical Society Transactions
Biochem Soc Trans (2020) 48 (4): 1637–1643.
https://doi.org/10.1042/BST20200008
Published: 05 August 2020
View article titled, Reinforcement learning in synthetic gene circuits
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Articles

The evolutionary dynamics of venom toxins made by insects and other animals

Andrew A. Walker
Journal: Biochemical Society Transactions
Biochem Soc Trans (2020) 48 (4): 1353–1365.
https://doi.org/10.1042/BST20190820
Published: 05 August 2020
View article titled, The evolutionary dynamics of venom toxins made by insects and other animals
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Articles

Controlling gene expression with light: a multidisciplinary endeavour

In Collection
Awards
Denis Hartmann, Jefferson M. Smith, Giacomo Mazzotti, Razia Chowdhry, Michael J. Booth
Journal: Biochemical Society Transactions
Biochem Soc Trans (2020) 48 (4): 1645–1659.
https://doi.org/10.1042/BST20200014
Published: 13 July 2020
View article titled, Controlling gene expression with light: a multidisciplinary endeavour
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Articles

Synthetic biology approaches towards the recycling of metals from the environment

Michael J. Capeness, Louise E. Horsfall
Journal: Biochemical Society Transactions
Biochem Soc Trans (2020) 48 (4): 1367–1378.
https://doi.org/10.1042/BST20190837
Published: 06 July 2020
View article titled, Synthetic biology approaches towards the recycling of metals from the environment
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Articles

Engineering pattern formation and morphogenesis

Jamie A. Davies, Fokion Glykofrydis
Journal: Biochemical Society Transactions
Biochem Soc Trans (2020) 48 (3): 1177–1185.
https://doi.org/10.1042/BST20200013
Published: 08 June 2020
View article titled, Engineering pattern formation and morphogenesis
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Articles

Developing synthetic biology for industrial biotechnology applications

Lionel Clarke, Richard Kitney
Journal: Biochemical Society Transactions
Biochem Soc Trans (2020) 48 (1): 113–122.
https://doi.org/10.1042/BST20190349
Published: 20 February 2020
View article titled, Developing synthetic biology for industrial biotechnology applications
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Articles

AMPfret: synthetic nanosensor for cellular energy states

Hannah Crocker, Martin Pelosse, Uwe Schlattner, Imre Berger
Journal: Biochemical Society Transactions
Biochem Soc Trans (2020) 48 (1): 103–111.
https://doi.org/10.1042/BST20190347
Published: 03 February 2020
View article titled, AMPfret: synthetic nanosensor for cellular energy states
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Articles

Engineering of industrially important microorganisms for assimilation of cellulosic biomass: towards consolidated bioprocessing

Marcos Valenzuela-Ortega, Christopher E. French
Journal: Biochemical Society Transactions
Biochem Soc Trans (2019) 47 (6): 1781–1794.
https://doi.org/10.1042/BST20190293
Published: 17 December 2019
View article titled, Engineering of industrially important microorganisms for assimilation of cellulosic biomass: towards consolidated bioprocessing
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Articles

A protocell with fusion and division

Bo-Ying Xu, Jian Xu, Tetsuya Yomo
Journal: Biochemical Society Transactions
Biochem Soc Trans (2019) 47 (6): 1909–1919.
https://doi.org/10.1042/BST20190576
Published: 10 December 2019
View article titled, A protocell with fusion and division
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Articles

Controlling cell-to-cell variability with synthetic gene circuits

Asli Azizoglu, Jörg Stelling
Journal: Biochemical Society Transactions
Biochem Soc Trans (2019) 47 (6): 1795–1804.
https://doi.org/10.1042/BST20190295
Published: 05 December 2019
View article titled, Controlling cell-to-cell variability with synthetic gene circuits
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Articles

Building cell factories for the production of advanced fuels

Tabinda Shakeel, Ashima Sharma, Syed Shams Yazdani
Journal: Biochemical Society Transactions
Biochem Soc Trans (2019) 47 (6): 1701–1714.
https://doi.org/10.1042/BST20190168
Published: 05 December 2019
View article titled, Building cell factories for the production of advanced fuels
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Articles

Better together: building protein oligomers naturally and by design

Rebecca E.A. Gwyther, D. Dafydd Jones, Harley L. Worthy
Journal: Biochemical Society Transactions
Biochem Soc Trans (2019) 47 (6): 1773–1780.
https://doi.org/10.1042/BST20190283
Published: 05 December 2019
View article titled, Better together: building protein oligomers naturally and by design
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Articles

Using energy-efficient synthetic biochemical pathways to bypass photorespiration

Veronica G. Maurino
Journal: Biochemical Society Transactions
Biochem Soc Trans (2019) 47 (6): 1805–1813.
https://doi.org/10.1042/BST20190322
Published: 22 November 2019
View article titled, Using energy-efficient synthetic biochemical pathways to bypass photorespiration
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Articles

Reprogramming bacteria with RNA regulators

Patrícia Apura, Susana Domingues, Sandra C. Viegas, Cecília M. Arraiano
Journal: Biochemical Society Transactions
Biochem Soc Trans (2019) 47 (5): 1279–1289.
https://doi.org/10.1042/BST20190173
Published: 23 October 2019
View article titled, Reprogramming bacteria with RNA regulators
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Articles

Applications of catalyzed cytoplasmic disulfide bond formation

Mirva J. Saaranen, Lloyd W. Ruddock
Journal: Biochemical Society Transactions
Biochem Soc Trans (2019) 47 (5): 1223–1231.
https://doi.org/10.1042/BST20190088
Published: 11 October 2019
View article titled, Applications of catalyzed cytoplasmic disulfide bond formation
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Articles

Designing minimalist membrane proteins

Paul Curnow
Journal: Biochemical Society Transactions
Biochem Soc Trans (2019) 47 (5): 1233–1245.
https://doi.org/10.1042/BST20190170
Published: 11 October 2019
View article titled, Designing minimalist membrane proteins
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Articles

Phage-based biocontrol strategies and their application in agriculture and aquaculture

Ron L. Dy, Luciano A. Rigano, Peter C. Fineran
Journal: Biochemical Society Transactions
Biochem Soc Trans (2018) 46 (6): 1605–1613.
https://doi.org/10.1042/BST20180178
Published: 04 December 2018
View article titled, Phage-based biocontrol strategies and their application in agriculture and aquaculture
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Articles

Lipids modulate the insertion and folding of the nascent chains of alpha helical membrane proteins

Nicola J. Harris, Kalypso Charalambous, Heather E. Findlay, Paula J. Booth
Journal: Biochemical Society Transactions
Biochem Soc Trans (2018) 46 (5): 1355–1366.
https://doi.org/10.1042/BST20170424
Published: 06 September 2018
View article titled, Lipids modulate the insertion and folding of the nascent chains of alpha helical membrane proteins
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Articles

CBMNet: the ‘Crossing Biological Membranes’ network in industrial biotechnology and bioenergy

Jen Vanderhoven, Jeffrey Green, Gavin H. Thomas
Journal: Biochemical Society Transactions
Biochem Soc Trans (2018) 46 (4): 871–875.
https://doi.org/10.1042/BST20170532
Published: 19 July 2018
View article titled, CBMNet: the ‘Crossing Biological Membranes’ network in industrial biotechnology and bioenergy
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Articles

Model-based metabolism design: constraints for kinetic and stoichiometric models

Egils Stalidzans, Andrus Seiman, Karl Peebo, Vitalijs Komasilovs, Agris Pentjuss
Journal: Biochemical Society Transactions
Biochem Soc Trans (2018) 46 (2): 261–267.
https://doi.org/10.1042/BST20170263
Published: 22 February 2018
View article titled, Model-based metabolism design: constraints for kinetic and stoichiometric models
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Articles

Structure and function of the cytochrome P450 peroxygenase enzymes

Andrew W. Munro, Kirsty J. McLean, Job L. Grant, Thomas M. Makris
Journal: Biochemical Society Transactions
Biochem Soc Trans (2018) 46 (1): 183–196.
https://doi.org/10.1042/BST20170218
Published: 06 February 2018
View article titled, Structure and function of the cytochrome P450 peroxygenase enzymes
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Articles

Resource allocation in living organisms

Anne Goelzer, Vincent Fromion
Journal: Biochemical Society Transactions
Biochem Soc Trans (2017) 45 (4): 945–952.
https://doi.org/10.1042/BST20160436
Published: 07 July 2017
View article titled, Resource allocation in living organisms
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Articles

Cell-free synthetic biology for in vitro prototype engineering

Simon J. Moore, James T. MacDonald, Paul S. Freemont
Journal: Biochemical Society Transactions
Biochem Soc Trans (2017) 45 (3): 785–791.
https://doi.org/10.1042/BST20170011
Published: 15 June 2017
View article titled, Cell-free synthetic biology for in vitro prototype engineering
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Articles

A standard-enabled workflow for synthetic biology

Chris J. Myers, Jacob Beal, Thomas E. Gorochowski, Hiroyuki Kuwahara, Curtis Madsen, James Alastair McLaughlin, Göksel Mısırlı, Tramy Nguyen, Ernst Oberortner, Meher Samineni, Anil Wipat, Michael Zhang, Zach Zundel
Journal: Biochemical Society Transactions
Biochem Soc Trans (2017) 45 (3): 793–803.
https://doi.org/10.1042/BST20160347
Published: 15 June 2017
View article titled, A standard-enabled workflow for synthetic biology
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Includes: Supplementary data
Articles

Learning to read and write in evolution: from static pseudoenzymes and pseudosignalers to dynamic gear shifters

Abulikemu Abudukelimu, Thierry D.G.A. Mondeel, Matteo Barberis, Hans V. Westerhoff
Journal: Biochemical Society Transactions
Biochem Soc Trans (2017) 45 (3): 635–652.
https://doi.org/10.1042/BST20160281
Published: 15 June 2017
View article titled, Learning to read and write in evolution: from static pseudoenzymes and pseudosignalers to dynamic gear shifters
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Articles

CSBB: synthetic biology research at Newcastle University

Angel Goñi-Moreno, Anil Wipat, Natalio Krasnogor
Journal: Biochemical Society Transactions
Biochem Soc Trans (2017) 45 (3): 781–783.
https://doi.org/10.1042/BST20160437
Published: 15 June 2017
View article titled, CSBB: synthetic biology research at Newcastle University
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