1-48 of 48
Genomics
Close
Save search
Follow your search
Access your saved searches in your account
Would you like to receive an alert when new items match your search?
Close Modal
Sort by
Articles

The MYBL1/TCFL5 transcription network: two collaborative factors with central role in male meiosis

Martin Säflund, Deniz M. Özata
Journal: Biochemical Society Transactions
Biochem Soc Trans (2023) BST20231007.
https://doi.org/10.1042/BST20231007
Published: 28 November 2023
View article titled, The MYBL1/TCFL5 transcription network: two collaborative factors with central role in male meiosis
Open the PDF for The MYBL1/TCFL5 transcription network: two collaborative factors with central role in male meiosis in another window
Articles

Enhancer target prediction: state-of-the-art approaches and future prospects

Ramzan Umarov, Chung-Chau Hon
Journal: Biochemical Society Transactions
Biochem Soc Trans (2023) 51 (5): 1975–1988.
https://doi.org/10.1042/BST20230917
Published: 13 October 2023
View article titled, Enhancer target prediction: state-of-the-art approaches and future prospects
Open the PDF for Enhancer target prediction: state-of-the-art approaches and future prospects in another window
Articles

The central role of translation elongation in response to stress

Géssica C. Barros, Sofia Guerrero, Gustavo M. Silva
Journal: Biochemical Society Transactions
Biochem Soc Trans (2023) 51 (3): 959–969.
https://doi.org/10.1042/BST20220584
Published: 15 June 2023
View article titled, The central role of translation elongation in response to stress
Open the PDF for The central role of translation elongation in response to stress in another window
Articles

Experimental systems for the analysis of mutational signatures: no ‘one-size-fits-all' solution

Dmitri Ivanov, Taejoo Hwang, Lukasz Karol Sitko, Semin Lee, Anton Gartner
Journal: Biochemical Society Transactions
Biochem Soc Trans (2023) 51 (3): 1307–1317.
https://doi.org/10.1042/BST20221482
Published: 07 June 2023
View article titled, Experimental systems for the analysis of mutational signatures: no ‘one-size-fits-all' solution
Open the PDF for Experimental systems for the analysis of mutational signatures: no ‘one-size-fits-all' solution in another window
Articles

The functional importance of bacterial oxidative phosphonate pathways

Katharina Pallitsch, David L. Zechel
Journal: Biochemical Society Transactions
Biochem Soc Trans (2023) 51 (2): 487–499.
https://doi.org/10.1042/BST20220479
Published: 09 March 2023
View article titled, The functional importance of bacterial oxidative phosphonate pathways
Open the PDF for The functional importance of bacterial oxidative phosphonate pathways in another window
Articles

Uncovering novel regulators of memory using C. elegans genetic and genomic analysis

Katie L. Brandel-Ankrapp, Rachel N. Arey
Journal: Biochemical Society Transactions
Biochem Soc Trans (2023) 51 (1): 161–171.
https://doi.org/10.1042/BST20220455
Published: 06 February 2023
View article titled, Uncovering novel regulators of memory using C. elegans genetic and genomic analysis
Open the PDF for Uncovering novel regulators of memory using C. elegans genetic and genomic analysis in another window
Articles

Targeting trypanosomes: how chemogenomics and artificial intelligence can guide drug discovery

Lionel Urán Landaburu, Mercedes Didier Garnham, Fernán Agüero
Journal: Biochemical Society Transactions
Biochem Soc Trans (2023) 51 (1): 195–206.
https://doi.org/10.1042/BST20220618
Published: 06 January 2023
View article titled, Targeting trypanosomes: how chemogenomics and artificial intelligence can guide drug discovery
Open the PDF for Targeting trypanosomes: how chemogenomics and artificial intelligence can guide drug discovery in another window
Articles

Form and function of archaeal genomes

Stephen D. Bell
Journal: Biochemical Society Transactions
Biochem Soc Trans (2022) 50 (6): 1931–1939.
https://doi.org/10.1042/BST20221396
Published: 13 December 2022
View article titled, Form and function of archaeal genomes
Open the PDF for Form and function of archaeal genomes in another window
Articles

General strategies for using amino acid sequence data to guide biochemical investigation of protein function

Emily N. Kennedy, Clay A. Foster, Sarah A. Barr, Robert B. Bourret
Journal: Biochemical Society Transactions
Biochem Soc Trans (2022) 50 (6): 1847–1858.
https://doi.org/10.1042/BST20220849
Published: 23 November 2022
View article titled, General strategies for using amino acid sequence data to guide biochemical investigation of protein function
Open the PDF for General strategies for using amino acid sequence data to guide biochemical investigation of protein function in another window
Articles

Using genomics to understand the mechanisms of virulence and drug resistance in fungal pathogens

Miquel Àngel Schikora-Tamarit, Toni Gabaldón
Journal: Biochemical Society Transactions
Biochem Soc Trans (2022) 50 (3): 1259–1268.
https://doi.org/10.1042/BST20211123
Published: 17 June 2022
View article titled, Using genomics to understand the mechanisms of virulence and drug resistance in fungal pathogens
Open the PDF for Using genomics to understand the mechanisms of virulence and drug resistance in fungal pathogens in another window
Articles

Investigating chromatin accessibility during development and differentiation by ATAC-sequencing to guide the identification of cis -regulatory elements

Emily Louise Smith, Gi Fay Mok, Andrea Münsterberg
Journal: Biochemical Society Transactions
Biochem Soc Trans (2022) 50 (3): 1167–1177.
https://doi.org/10.1042/BST20210834
Published: 23 May 2022
View article titled, Investigating chromatin accessibility during development and differentiation by ATAC-sequencing to guide the identification of cis -regulatory elements
Open the PDF for Investigating chromatin accessibility during development and differentiation by ATAC-sequencing to guide the identification of cis -regulatory elements in another window
Articles

Role of SWI/SNF chromatin remodeling genes in lung cancer development

Beatriz Monterde, Ignacio Varela
Journal: Biochemical Society Transactions
Biochem Soc Trans (2022) 50 (3): 1143–1150.
https://doi.org/10.1042/BST20211084
Published: 19 May 2022
View article titled, Role of SWI/SNF chromatin remodeling genes in lung cancer development
Open the PDF for Role of SWI/SNF chromatin remodeling genes in lung cancer development in another window
Articles

Encyclopaedia of eukaryotic DNA methylation: from patterns to mechanisms and functions

Peter Sarkies
Journal: Biochemical Society Transactions
Biochem Soc Trans (2022) 50 (3): 1179–1190.
https://doi.org/10.1042/BST20210725
Published: 06 May 2022
View article titled, Encyclopaedia of eukaryotic DNA methylation: from patterns to mechanisms and functions
Open the PDF for Encyclopaedia of eukaryotic DNA methylation: from patterns to mechanisms and functions in another window
Articles

Phenomics approaches to understand genetic networks and gene function in yeast

Clarence Hue Lok Yeung, Nil Sahin, Brenda Andrews
Journal: Biochemical Society Transactions
Biochem Soc Trans (2022) 50 (2): 713–721.
https://doi.org/10.1042/BST20210285
Published: 14 March 2022
View article titled, Phenomics approaches to understand genetic networks and gene function in yeast
Open the PDF for Phenomics approaches to understand genetic networks and gene function in yeast in another window
Articles

Decoding the sorghum methylome: understanding epigenetic contributions to agronomic traits

Ulduz Vafadarshamasbi, Emma Mace, David Jordan, Peter A. Crisp
Journal: Biochemical Society Transactions
Biochem Soc Trans (2022) 50 (1): 583–596.
https://doi.org/10.1042/BST20210908
Published: 25 February 2022
View article titled, Decoding the sorghum methylome: understanding epigenetic contributions to agronomic traits
Open the PDF for Decoding the sorghum methylome: understanding epigenetic contributions to agronomic traits in another window
Articles

Control of non-productive RNA polymerase II transcription via its early termination in metazoans

Jérôme O. Rouvière, Søren Lykke-Andersen, Torben Heick Jensen
Journal: Biochemical Society Transactions
Biochem Soc Trans (2022) 50 (1): 283–295.
https://doi.org/10.1042/BST20201140
Published: 15 February 2022
View article titled, Control of non-productive RNA polymerase II transcription via its early termination in metazoans
Open the PDF for Control of non-productive RNA polymerase II transcription via its early termination in metazoans in another window
Articles

Rare catastrophes and evolutionary legacies: human germline gene variants in MLKL and the necroptosis signalling pathway

In Collection
Cell death and survival
Sarah E. Garnish, Joanne M. Hildebrand
Journal: Biochemical Society Transactions
Biochem Soc Trans (2022) 50 (1): 529–539.
https://doi.org/10.1042/BST20210517
Published: 15 February 2022
View article titled, Rare catastrophes and evolutionary legacies: human germline gene variants in MLKL and the necroptosis signalling pathway
Open the PDF for Rare catastrophes and evolutionary legacies: human germline gene variants in MLKL and the necroptosis signalling pathway in another window
Articles

Whole-genome methods to define DNA and histone accessibility and long-range interactions in chromatin

Luke T. Marr, Prasoon Jaya, Laxmi N. Mishra, Jeffrey J. Hayes
Journal: Biochemical Society Transactions
Biochem Soc Trans (2022) 50 (1): 199–212.
https://doi.org/10.1042/BST20210959
Published: 15 February 2022
View article titled, Whole-genome methods to define DNA and histone accessibility and long-range interactions in chromatin
Open the PDF for Whole-genome methods to define DNA and histone accessibility and long-range interactions in chromatin in another window
Articles

The role of chromatin at transcription-replication conflicts as a genome safeguard

Aleix Bayona-Feliu, Andrés Aguilera
Journal: Biochemical Society Transactions
Biochem Soc Trans (2021) 49 (6): 2727–2736.
https://doi.org/10.1042/BST20210691
Published: 25 November 2021
View article titled, The role of chromatin at transcription-replication conflicts as a genome safeguard
Open the PDF for The role of chromatin at transcription-replication conflicts as a genome safeguard in another window
Articles

Programmed DNA elimination: silencing genes and repetitive sequences in somatic cells

Maxim V. Zagoskin, Jianbin Wang
Journal: Biochemical Society Transactions
Biochem Soc Trans (2021) 49 (5): 1891–1903.
https://doi.org/10.1042/BST20190951
Published: 19 October 2021
View article titled, Programmed DNA elimination: silencing genes and repetitive sequences in somatic cells
Open the PDF for Programmed DNA elimination: silencing genes and repetitive sequences in somatic cells in another window
Articles

Integration of functional genomics data to uncover cell type-specific pathways affected in Parkinson's disease

Viola Volpato
Journal: Biochemical Society Transactions
Biochem Soc Trans (2021) 49 (5): 2091–2100.
https://doi.org/10.1042/BST20210128
Published: 28 September 2021
View article titled, Integration of functional genomics data to uncover cell type-specific pathways affected in Parkinson's disease
Open the PDF for Integration of functional genomics data to uncover cell type-specific pathways affected in Parkinson's disease in another window
Articles

Regulation of retrotransposition in Arabidopsis

Seung Cho Lee, Robert A. Martienssen
Journal: Biochemical Society Transactions
Biochem Soc Trans (2021) 49 (5): 2241–2251.
https://doi.org/10.1042/BST20210337
Published: 08 September 2021
View article titled, Regulation of retrotransposition in Arabidopsis
Open the PDF for Regulation of retrotransposition in Arabidopsis in another window
Articles

Quantitative neurogenetics: applications in understanding disease

Ali Afrasiabi, Jeremy T. Keane, Julian Ik-Tsen Heng, Elizabeth E. Palmer, Nigel H. Lovell, Hamid Alinejad-Rokny
Journal: Biochemical Society Transactions
Biochem Soc Trans (2021) 49 (4): 1621–1631.
https://doi.org/10.1042/BST20200732
Published: 20 July 2021
View article titled, Quantitative neurogenetics: applications in understanding disease
Open the PDF for Quantitative neurogenetics: applications in understanding disease in another window
Articles

Sequence determinants, function, and evolution of CpG islands

Allegra Angeloni, Ozren Bogdanovic
Journal: Biochemical Society Transactions
Biochem Soc Trans (2021) 49 (3): 1109–1119.
https://doi.org/10.1042/BST20200695
Published: 22 June 2021
View article titled, Sequence determinants, function, and evolution of CpG islands
Open the PDF for Sequence determinants, function, and evolution of CpG islands in another window
Articles

Molecular genetics of renal ciliopathies

Miguel Barroso-Gil, Eric Olinger, John A. Sayer
Journal: Biochemical Society Transactions
Biochem Soc Trans (2021) 49 (3): 1205–1220.
https://doi.org/10.1042/BST20200791
Published: 07 May 2021
View article titled, Molecular genetics of renal ciliopathies
Open the PDF for Molecular genetics of renal ciliopathies in another window
Articles

Dynamics of bacterial adaptation

Huei-Yi Lai, Tim F. Cooper
Journal: Biochemical Society Transactions
Biochem Soc Trans (2021) 49 (2): 945–951.
https://doi.org/10.1042/BST20200885
Published: 12 April 2021
View article titled, Dynamics of bacterial adaptation
Open the PDF for Dynamics of bacterial adaptation in another window
Articles

Beyond the pan-genome: current perspectives on the functional and practical outcomes of the distributed genome hypothesis

Jocelyn A. Hammond, Emma A. Gordon, Kayla M. Socarras, Joshua Chang Mell, Garth D. Ehrlich
Journal: Biochemical Society Transactions
Biochem Soc Trans (2020) 48 (6): 2437–2455.
https://doi.org/10.1042/BST20190713
Published: 27 November 2020
View article titled, Beyond the pan-genome: current perspectives on the functional and practical outcomes of the distributed genome hypothesis
Open the PDF for Beyond the pan-genome: current perspectives on the functional and practical outcomes of the distributed genome hypothesis in another window
Articles

Decoding co-/post-transcriptional complexities of plant transcriptomes and epitranscriptome using next-generation sequencing technologies

Anireddy S.N. Reddy, Jie Huang, Naeem H. Syed, Asa Ben-Hur, Suomeng Dong, Lianfeng Gu
Journal: Biochemical Society Transactions
Biochem Soc Trans (2020) 48 (6): 2399–2414.
https://doi.org/10.1042/BST20190492
Published: 16 November 2020
View article titled, Decoding co-/post-transcriptional complexities of plant transcriptomes and epitranscriptome using next-generation sequencing technologies
Open the PDF for Decoding co-/post-transcriptional complexities of plant transcriptomes and epitranscriptome using next-generation sequencing technologies in another window
Includes: Supplementary data
Articles

Architectural RNA in chromatin organization

Jitendra Thakur, Steven Henikoff
Journal: Biochemical Society Transactions
Biochem Soc Trans (2020) 48 (5): 1967–1978.
https://doi.org/10.1042/BST20191226
Published: 08 September 2020
View article titled, Architectural RNA in chromatin organization
Open the PDF for Architectural RNA in chromatin organization in another window
Articles

The evolutionary dynamics of venom toxins made by insects and other animals

Andrew A. Walker
Journal: Biochemical Society Transactions
Biochem Soc Trans (2020) 48 (4): 1353–1365.
https://doi.org/10.1042/BST20190820
Published: 05 August 2020
View article titled, The evolutionary dynamics of venom toxins made by insects and other animals
Open the PDF for The evolutionary dynamics of venom toxins made by insects and other animals in another window
Articles

DNA copy number and structural variation (CNV) contributions to adult and childhood obesity

Megan Phillips, Jeganathan Ramesh Babu, Xu Wang, Thangiah Geetha
Journal: Biochemical Society Transactions
Biochem Soc Trans (2020) 48 (4): 1819–1828.
https://doi.org/10.1042/BST20200556
Published: 29 July 2020
View article titled, DNA copy number and structural variation (CNV) contributions to adult and childhood obesity
Open the PDF for DNA copy number and structural variation (CNV) contributions to adult and childhood obesity in another window
Articles

Computational discovery and modeling of novel gene expression rules encoded in the mRNA

Shir Bahiri-Elitzur, Tamir Tuller
Journal: Biochemical Society Transactions
Biochem Soc Trans (2020) 48 (4): 1519–1528.
https://doi.org/10.1042/BST20191048
Published: 14 July 2020
View article titled, Computational discovery and modeling of novel gene expression rules encoded in the mRNA
Open the PDF for Computational discovery and modeling of novel gene expression rules encoded in the mRNA in another window
Articles

Small nucleolar RNAs: continuing identification of novel members and increasing diversity of their molecular mechanisms of action

Danny Bergeron, Étienne Fafard-Couture, Michelle S. Scott
Journal: Biochemical Society Transactions
Biochem Soc Trans (2020) 48 (2): 645–656.
https://doi.org/10.1042/BST20191046
Published: 08 April 2020
View article titled, Small nucleolar RNAs: continuing identification of novel members and increasing diversity of their molecular mechanisms of action
Open the PDF for Small nucleolar RNAs: continuing identification of novel members and increasing diversity of their molecular mechanisms of action in another window
Articles

Detection of CRISPR adaptation

Anna Shiriaeva, Ivan Fedorov, Danylo Vyhovskyi, Konstantin Severinov
Journal: Biochemical Society Transactions
Biochem Soc Trans (2020) 48 (1): 257–269.
https://doi.org/10.1042/BST20190662
Published: 03 February 2020
View article titled, Detection of CRISPR adaptation
Open the PDF for Detection of CRISPR adaptation in another window
Includes: Supplementary data
Articles

Using single-cell RNA sequencing to unravel cell lineage relationships in the respiratory tract

L.E. Zaragosi, M. Deprez, P. Barbry
Journal: Biochemical Society Transactions
Biochem Soc Trans (2020) 48 (1): 327–336.
https://doi.org/10.1042/BST20191010
Published: 10 January 2020
View article titled, Using single-cell RNA sequencing to unravel cell lineage relationships in the respiratory tract
Open the PDF for Using single-cell RNA sequencing to unravel cell lineage relationships in the respiratory tract in another window
Articles

Characterization and applications of Type I CRISPR-Cas systems

Claudio Hidalgo-Cantabrana, Rodolphe Barrangou
Journal: Biochemical Society Transactions
Biochem Soc Trans (2020) 48 (1): 15–23.
https://doi.org/10.1042/BST20190119
Published: 10 January 2020
View article titled, Characterization and applications of Type I CRISPR-Cas systems
Open the PDF for Characterization and applications of Type I CRISPR-Cas systems in another window
Articles

‘Stop’ in protein synthesis is modulated with exquisite subtlety by an extended RNA translation signal

Warren P. Tate, Andrew G. Cridge, Chris M. Brown
Journal: Biochemical Society Transactions
Biochem Soc Trans (2018) 46 (6): 1615–1625.
https://doi.org/10.1042/BST20180190
Published: 12 November 2018
View article titled, ‘Stop’ in protein synthesis is modulated with exquisite subtlety by an extended RNA translation signal
Open the PDF for ‘Stop’ in protein synthesis is modulated with exquisite subtlety by an extended RNA translation signal in another window
Articles

The molecular clock and evolutionary timescales

Arong Luo, Simon Y. W. Ho
Journal: Biochemical Society Transactions
Biochem Soc Trans (2018) 46 (5): 1183–1190.
https://doi.org/10.1042/BST20180186
Published: 28 August 2018
View article titled, The molecular clock and evolutionary timescales
Open the PDF for The molecular clock and evolutionary timescales in another window
Articles

The biological relevance of a medieval king's DNA

Maarten H.D. Larmuseau, Martin Bodner
Journal: Biochemical Society Transactions
Biochem Soc Trans (2018) 46 (4): 1013–1020.
https://doi.org/10.1042/BST20170173
Published: 31 July 2018
View article titled, The biological relevance of a medieval king's DNA
Open the PDF for The biological relevance of a medieval king's DNA in another window
Articles

RHO GTPases in cancer: known facts, open questions, and therapeutic challenges

Xosé R. Bustelo
Journal: Biochemical Society Transactions
Biochem Soc Trans (2018) 46 (3): 741–760.
https://doi.org/10.1042/BST20170531
Published: 05 June 2018
View article titled, RHO GTPases in cancer: known facts, open questions, and therapeutic challenges
Open the PDF for RHO GTPases in cancer: known facts, open questions, and therapeutic challenges in another window
Articles

Studying X chromosome inactivation in the single-cell genomic era

Andrew Keniry, Marnie E. Blewitt
Journal: Biochemical Society Transactions
Biochem Soc Trans (2018) 46 (3): 577–586.
https://doi.org/10.1042/BST20170346
Published: 20 April 2018
View article titled, Studying X chromosome inactivation in the single-cell genomic era
Open the PDF for Studying X chromosome inactivation in the single-cell genomic era in another window
Articles

Biomolecular coevolution and its applications: Going from structure prediction toward signaling, epistasis, and function

Mehari B. Zerihun, Alexander Schug
Journal: Biochemical Society Transactions
Biochem Soc Trans (2017) 45 (6): 1253–1261.
https://doi.org/10.1042/BST20170063
Published: 20 October 2017
View article titled, Biomolecular coevolution and its applications: Going from structure prediction toward signaling, epistasis, and function
Open the PDF for Biomolecular coevolution and its applications: Going from structure prediction toward signaling, epistasis, and function in another window
Articles

When mRNA translation meets decay

Alicia A. Bicknell, Emiliano P. Ricci
Journal: Biochemical Society Transactions
Biochem Soc Trans (2017) 45 (2): 339–351.
https://doi.org/10.1042/BST20160243
Published: 13 April 2017
View article titled, When mRNA translation meets decay
Open the PDF for When mRNA translation meets decay in another window
Articles

Constraints in cancer evolution

Subramanian Venkatesan, Nicolai J. Birkbak, Charles Swanton
Journal: Biochemical Society Transactions
Biochem Soc Trans (2017) 45 (1): 1–13.
https://doi.org/10.1042/BST20160229
Published: 15 February 2017
View article titled, Constraints in cancer evolution
Open the PDF for Constraints in cancer evolution in another window
Articles

Structure and function of bacterial H-NS protein

David C. Grainger
Journal: Biochemical Society Transactions
Biochem Soc Trans (2016) 44 (6): 1561–1569.
https://doi.org/10.1042/BST20160190
Published: 02 December 2016
View article titled, Structure and function of bacterial H-NS protein
Open the PDF for Structure and function of bacterial H-NS protein in another window
Articles

Dawn of the in vivo RNA structurome and interactome

Chun Kit Kwok
Journal: Biochemical Society Transactions
Biochem Soc Trans (2016) 44 (5): 1395–1410.
https://doi.org/10.1042/BST20160075
Published: 19 October 2016
View article titled, Dawn of the in vivo RNA structurome and interactome
Open the PDF for Dawn of the in vivo RNA structurome and interactome in another window
Articles

Mutational patterns in oncogenes and tumour suppressors

Hanadi M. Baeissa, Graeme Benstead-Hume, Christopher J. Richardson, Frances M.G. Pearl
Journal: Biochemical Society Transactions
Biochem Soc Trans (2016) 44 (3): 925–931.
https://doi.org/10.1042/BST20160001
Published: 09 June 2016
View article titled, Mutational patterns in oncogenes and tumour suppressors
Open the PDF for Mutational patterns in oncogenes and tumour suppressors in another window
Includes: Supplementary data
Articles

‘Nothing of chemistry disappears in biology’: the Top 30 damage-prone endogenous metabolites

Claudia Lerma-Ortiz, James G. Jeffryes, Arthur J.L. Cooper, Thomas D. Niehaus, Antje M.K. Thamm, Océane Frelin, Thomas Aunins, Oliver Fiehn, Valérie de Crécy-Lagard, Christopher S. Henry, Andrew D. Hanson
Journal: Biochemical Society Transactions
Biochem Soc Trans (2016) 44 (3): 961–971.
https://doi.org/10.1042/BST20160073
Published: 09 June 2016
View article titled, ‘Nothing of chemistry disappears in biology’: the Top 30 damage-prone endogenous metabolites
Open the PDF for ‘Nothing of chemistry disappears in biology’: the Top 30 damage-prone endogenous metabolites in another window
Includes: Supplementary data