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Computational approaches to understand transcription regulation in development

Maarten van der Sande, Siebren Frölich, Simon J. van Heeringen

Biochem Soc Trans (2023) BST20210145.

DOI: https://doi.org/10.1042/BST20210145

Published: 25 January 2023

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Articles

Therapeutic targeting of eukaryotic initiation factor (eIF) 4E

Jerry Pelletier, Nahum Sonenberg

Biochem Soc Trans (2023) BST20220285.

DOI: https://doi.org/10.1042/BST20220285

Published: 20 January 2023

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Articles

The TFIIS N-terminal domain (TND): a transcription assembly module at the interface of order and disorder

Katerina Cermakova, Vaclav Veverka, H. Courtney Hodges

Biochem Soc Trans (2023) BST20220342.

DOI: https://doi.org/10.1042/BST20220342

Published: 18 January 2023

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Articles

Interactions governing transcriptional activity of nuclear receptors

Sabab Hasan Khan, C. Denise Okafor

Biochem Soc Trans (2022) 50 (6): 1941–1952.

DOI: https://doi.org/10.1042/BST20220338

Published: 16 December 2022

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Articles

The pleiotropic roles of eIF5A in cellular life and its therapeutic potential in cancer

Aristeidis Panagiotis Sfakianos, Rebecca Mallory Raven, Anne Elizabeth Willis

Biochem Soc Trans (2022) 50 (6): 1885–1895.

DOI: https://doi.org/10.1042/BST20221035

Published: 13 December 2022

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Articles

Is bRaQCing bad? New roles for ribosome associated quality control factors in stress granule regulation

Noah S. Helton, Stephanie L. Moon

Biochem Soc Trans (2022) 50 (6): 1715–1724.

DOI: https://doi.org/10.1042/BST20220549

Published: 09 December 2022

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Articles

Activities and binding partners of E3 ubiquitin ligase DTX3L and its roles in cancer

Carlos Vela-Rodríguez, Lari Lehtiö

Biochem Soc Trans (2022) 50 (6): 1683–1692.

DOI: https://doi.org/10.1042/BST20220501

Published: 24 November 2022

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Articles

Mammalian gastrulation: signalling activity and transcriptional regulation of cell lineage differentiation and germ layer formation

Nazmus Salehin, Hilary Knowles, V. Pragathi Masamsetti, Patrick P.L. Tam

Biochem Soc Trans (2022) 50 (6): 1619–1631.

DOI: https://doi.org/10.1042/BST20220256

Published: 18 November 2022

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Articles

Unveiling dynamic enhancer–promoter interactions in Drosophila melanogaster

Hao Deng, Gaochen Jin, Bomyi Lim

Biochem Soc Trans (2022) 50 (6): 1633–1642.

DOI: https://doi.org/10.1042/BST20220325

Published: 09 November 2022

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Articles

Frankenstein Cas9: engineering improved gene editing systems

Pascal D. Vos, Aleksandra Filipovska, Oliver Rackham

Biochem Soc Trans (2022) 50 (5): 1505–1516.

DOI: https://doi.org/10.1042/BST20220873

Published: 28 October 2022

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Articles

Transcriptional plasticity of fibroblasts in heart disease

Rudi Micheletti, Michael Alexanian

Biochem Soc Trans (2022) 50 (5): 1247–1255.

DOI: https://doi.org/10.1042/BST20210864

Published: 25 October 2022

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Articles

How does an organism extract relevant information from transcription factor concentrations?

Marianne Bauer

Biochem Soc Trans (2022) 50 (5): 1365–1376.

DOI: https://doi.org/10.1042/BST20220333

Published: 16 September 2022

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Articles

The intersection between circadian and heat-responsive regulatory networks controls plant responses to increasing temperatures

Kanjana Laosuntisuk, Colleen J. Doherty

Biochem Soc Trans (2022) 50 (3): 1151–1165.

DOI: https://doi.org/10.1042/BST20190572

Published: 27 June 2022

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Articles

The evolution and structure/function of bHLH–PAS transcription factor family

Hailey E. Edwards, Daniel A. Gorelick

Biochem Soc Trans (2022) 50 (3): 1227–1243.

DOI: https://doi.org/10.1042/BST20211225

Published: 13 June 2022

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Articles

Investigating chromatin accessibility during development and differentiation by ATAC-sequencing to guide the identification of cis -regulatory elements

Emily Louise Smith, Gi Fay Mok, Andrea Münsterberg

Biochem Soc Trans (2022) 50 (3): 1167–1177.

DOI: https://doi.org/10.1042/BST20210834

Published: 23 May 2022

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Articles

Small regulatory RNAs in rice epigenetic regulation

So Young Park, Jungnam Cho, Dong-Hoon Jeong

Biochem Soc Trans (2022) 50 (3): 1215–1225.

DOI: https://doi.org/10.1042/BST20210336

Published: 17 May 2022

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Articles

Mitotic drive in asymmetric epigenetic inheritance

Rajesh Ranjan, Xin Chen

Biochem Soc Trans (2022) 50 (2): 675–688.

DOI: https://doi.org/10.1042/BST20200267

Published: 19 April 2022

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Articles

To be or not be (in the LAD): emerging roles of lamin proteins in transcriptional regulation

Ezequiel Nazer

Biochem Soc Trans (2022) 50 (2): 1035–1044.

DOI: https://doi.org/10.1042/BST20210858

Published: 19 April 2022

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Articles

MicroRNAs in neural crest development and neurocristopathies

Marco Antonaci, Grant N. Wheeler

Biochem Soc Trans (2022) 50 (2): 965–974.

DOI: https://doi.org/10.1042/BST20210828

Published: 06 April 2022

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Articles

LncRNA: a new perspective on the study of neurological diseases

Yun Ma, Siqi He, Tianhe Gu, Yixuan Liu, Shuya He, Zhisheng Jiang

Biochem Soc Trans (2022) 50 (2): 951–963.

DOI: https://doi.org/10.1042/BST20211181

Published: 06 April 2022

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Articles

Glycans that regulate Notch signaling in the intestine

Mohd Nauman, Pamela Stanley

Biochem Soc Trans (2022) 50 (2): 689–701.

DOI: https://doi.org/10.1042/BST20200782

Published: 21 March 2022

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Articles

Epigenetic regulation of human non-coding RNA gene transcription

Marco Morselli, Giorgio Dieci

Biochem Soc Trans (2022) 50 (2): 723–736.

DOI: https://doi.org/10.1042/BST20210860

Published: 14 March 2022

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Articles

Decoding the sorghum methylome: understanding epigenetic contributions to agronomic traits

Ulduz Vafadarshamasbi, Emma Mace, David Jordan, Peter A. Crisp

Biochem Soc Trans (2022) 50 (1): 583–596.

DOI: https://doi.org/10.1042/BST20210908

Published: 25 February 2022

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Articles

Control of non-productive RNA polymerase II transcription via its early termination in metazoans

Jérôme O. Rouvière, Søren Lykke-Andersen, Torben Heick Jensen

Biochem Soc Trans (2022) 50 (1): 283–295.

DOI: https://doi.org/10.1042/BST20201140

Published: 15 February 2022

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Articles

Non-canonical roles of ATG8 for TFEB activation

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Cell death and survival

Shuhei Nakamura, Shiori Akayama, Tamotsu Yoshimori

Biochem Soc Trans (2022) 50 (1): 47–54.

DOI: https://doi.org/10.1042/BST20210813

Published: 15 February 2022

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Articles

Exploring the multifunctionality of SR proteins

Irena Slišković, Hannah Eich, Michaela Müller-McNicoll

Biochem Soc Trans (2022) 50 (1): 187–198.

DOI: https://doi.org/10.1042/BST20210325

Published: 23 December 2021

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Articles

Regulatory long non-coding RNAs in root growth and development

Thomas Roulé, Martin Crespi, Thomas Blein

Biochem Soc Trans (2022) 50 (1): 403–412.

DOI: https://doi.org/10.1042/BST20210743

Published: 23 December 2021

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Articles

Translational control in cell ageing: an update

Katrina Woodward, Nikolay E. Shirokikh

Biochem Soc Trans (2021) 49 (6): 2853–2869.

DOI: https://doi.org/10.1042/BST20210844

Published: 16 December 2021

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Articles

The tandem repeat modules of Xist lncRNA: a swiss army knife for the control of X-chromosome inactivation

Ana Cláudia Raposo, Miguel Casanova, Anne-Valerie Gendrel, Simão Teixeira da Rocha

Biochem Soc Trans (2021) 49 (6): 2549–2560.

DOI: https://doi.org/10.1042/BST20210253

Published: 09 December 2021

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Articles

Using cryo-EM to uncover mechanisms of bacterial transcriptional regulation

David M. Wood, Renwick C.J. Dobson, Christopher R. Horne

Biochem Soc Trans (2021) 49 (6): 2711–2726.

DOI: https://doi.org/10.1042/BST20210674

Published: 02 December 2021

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Articles

X-chromosome reactivation: a concise review

Alessandra Spaziano, Dr Irene Cantone

Biochem Soc Trans (2021) 49 (6): 2797–2805.

DOI: https://doi.org/10.1042/BST20210777

Published: 25 November 2021

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Articles

Regulation of spatially restricted gene expression: linking RNA localization and phase separation

Liam C. O'Connell, Kimberly L. Mowry

Biochem Soc Trans (2021) 49 (6): 2591–2600.

DOI: https://doi.org/10.1042/BST20210320

Published: 25 November 2021

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Articles

Pluripotency transcription factors at the focus: the phase separation paradigm in stem cells

Camila Oses, Martin Stortz, Paula Verneri, Alejandra Guberman, Valeria Levi

Biochem Soc Trans (2021) 49 (6): 2871–2878.

DOI: https://doi.org/10.1042/BST20210856

Published: 23 November 2021

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Articles

Structural insights into the interactions of Polycomb Repressive Complex 2 with chromatin

Akhil Gargey Iragavarapu, Liqi Yao, Vignesh Kasinath

Biochem Soc Trans (2021) 49 (6): 2639–2653.

DOI: https://doi.org/10.1042/BST20210450

Published: 08 November 2021

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Articles

LARP6 proteins in plants

Cécile Bousquet-Antonelli

Biochem Soc Trans (2021) 49 (5): 1975–1983.

DOI: https://doi.org/10.1042/BST20200715

Published: 28 October 2021

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Articles

Structural insights into glucocorticoid receptor function

Filipp Frank, Eric A. Ortlund, Xu Liu

Biochem Soc Trans (2021) 49 (5): 2333–2343.

DOI: https://doi.org/10.1042/BST20210419

Published: 28 October 2021

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Articles

Programmed DNA elimination: silencing genes and repetitive sequences in somatic cells

Maxim V. Zagoskin, Jianbin Wang

Biochem Soc Trans (2021) 49 (5): 1891–1903.

DOI: https://doi.org/10.1042/BST20190951

Published: 19 October 2021

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Articles

To export, or not to export: how nuclear export factor variants resolve Piwi's dilemma

Sheng Wang, Xiaohua Lu, Ding Qiu, Yang Yu

Biochem Soc Trans (2021) 49 (5): 2073–2079.

DOI: https://doi.org/10.1042/BST20201171

Published: 13 October 2021

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Articles

An integrated view of innate immune mechanisms in C. elegans

Benjamin W. Harding, Jonathan J. Ewbank

Biochem Soc Trans (2021) 49 (5): 2307–2317.

DOI: https://doi.org/10.1042/BST20210399

Published: 08 October 2021

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Articles

Integration of functional genomics data to uncover cell type-specific pathways affected in Parkinson's disease

Viola Volpato

Biochem Soc Trans (2021) 49 (5): 2091–2100.

DOI: https://doi.org/10.1042/BST20210128

Published: 28 September 2021

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Articles

Mechanisms of vascular smooth muscle cell investment and phenotypic diversification in vascular diseases

Matthew D. Worssam, Helle F. Jørgensen

Biochem Soc Trans (2021) 49 (5): 2101–2111.

DOI: https://doi.org/10.1042/BST20210138

Published: 08 September 2021

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Articles

Single-molecule mRNA and translation imaging in neurons

Jessica Mitchell, Jeffrey A. Chao

Biochem Soc Trans (2021) 49 (5): 2221–2227.

DOI: https://doi.org/10.1042/BST20210313

Published: 08 September 2021

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Articles

Progress and challenges in understanding the regulation and function of p53 dynamics

Zhilin Yang, Ryan L. Hanson, Eric Batchelor

Biochem Soc Trans (2021) 49 (5): 2123–2131.

DOI: https://doi.org/10.1042/BST20210148

Published: 08 September 2021

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Articles

Novel insights into the pervasive role of RNA structure in post-transcriptional regulation of gene expression in plants

Huakun Zhang, Yiliang Ding

Biochem Soc Trans (2021) 49 (4): 1829–1839.

DOI: https://doi.org/10.1042/BST20210318

Published: 26 August 2021

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Articles

The BAF chromatin remodeling complexes: structure, function, and synthetic lethalities

Julia Varga, Marie Kube, Katja Luck, Sandra Schick

Biochem Soc Trans (2021) 49 (4): 1489–1503.

DOI: https://doi.org/10.1042/BST20190960

Published: 25 August 2021

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Includes: Supplementary data

Articles

What defines the maternal transcriptome?

László Tora, Stéphane D. Vincent

Biochem Soc Trans (2021) 49 (5): 2051–2062.

DOI: https://doi.org/10.1042/BST20201125

Published: 20 August 2021

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Articles

U7 deciphered: the mechanism that forms the unusual 3′ end of metazoan replication-dependent histone mRNAs

Zbigniew Dominski, Liang Tong

Biochem Soc Trans (2021) 49 (5): 2229–2240.

DOI: https://doi.org/10.1042/BST20210323

Published: 05 August 2021

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Articles

Exploring chromatin structural roles of non-coding RNAs at imprinted domains

David Llères, Yui Imaizumi, Robert Feil

Biochem Soc Trans (2021) 49 (4): 1867–1879.

DOI: https://doi.org/10.1042/BST20210758

Published: 02 August 2021

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Articles

Polymer models are a versatile tool to study chromatin 3D organization

Andrea Esposito, Simona Bianco, Luca Fiorillo, Mattia Conte, Alex Abraham, Francesco Musella, Mario Nicodemi, Antonella Prisco, Andrea M. Chiariello

Biochem Soc Trans (2021) 49 (4): 1675–1684.

DOI: https://doi.org/10.1042/BST20201004

Published: 20 July 2021

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Articles

Transcriptional control of ribosome biogenesis in yeast: links to growth and stress signals

David Shore, Sevil Zencir, Benjamin Albert

Biochem Soc Trans (2021) 49 (4): 1589–1599.

DOI: https://doi.org/10.1042/BST20201136

Published: 09 July 2021

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