Based on experimental and bioinformatic approaches, we present the first empirically established complete secondary structure of human BC200 RNA. BC200 RNA is a brain-specific non-messenger RNA with a confirmed regulatory role in dendritic translation in neurons. Although the involvement of human BC200 RNA in various types of tumour and Alzheimer's disease has been repeatedly confirmed, the exact secondary structure remains not fully elucidated. To determine the secondary structure of BC200 RNA in vitro, we performed partial hydrolysis with sequence-specific nucleases and lead-induced cleavage. We also examined the availabilities of putative single-stranded regions and base-pairing interactions via specific DNAzymes and RNase H assay. To determine the complete spatial folding of BC200 RNA, we used experimental data as constraints in structure prediction programs and performed a comparison of results obtained by several algorithms using different criteria. Based on the experimental-derived secondary structure of BC200 RNA, we also predicted the tertiary structure of BC200 RNA. The presented combination of experimental and bioinformatic approaches not only enabled the determination of the most reliable secondary and tertiary structures of human BC200 RNA (largely in agreement with the previous phylogenetic model), but also verified the compatibility and potential disadvantages of utilizing in silico structure prediction programs.
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Cover Image
Cover Image
In this issue of the Biochemical Journal, Tong et al. report how a sesquiterpene synthase generates eudesmane-type sesquiterpene diols in Tripterygium wilfordii and which residues are important for cyclization. The cover image shows the flower of T. wilfordii and the structure of cryptomeridiol synthase. The background depicts ancient Chinese text that recorded the medicinal benefits of T. wilfordii and the engineered manipulation in yeast to enhance the production of the eudesmane diol cryptomeridiol. For further details, see pages 2713–2725. Image kindly provided by Wei Gao (Capital Medical University, Beijing).
Prediction of secondary and tertiary structures of human BC200 RNA (BCYRN1) based on experimental and bioinformatic cross-validation
Patrycja Sosińska-Zawierucha, Piotr Zawierucha, Andrzej Bręborowicz, Jan Barciszewski; Prediction of secondary and tertiary structures of human BC200 RNA (BCYRN1) based on experimental and bioinformatic cross-validation. Biochem J 14 September 2018; 475 (17): 2727–2748. doi: https://doi.org/10.1042/BCJ20180239
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